RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA599208" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA599208 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26649853 26649853 PRJNA599208_P_NODE_16521_length_151_cov_2.377193_g16325_i0 PRJNA599208 16521 151 2.377193 3.58956143 Pseudomonadati 3379134 Bacteria Bacteria 78.6 9.14e-16   NR MDL2122647.1 2026735 g16325 i0 70.8 2.86092715231788 48 14 95.4 0 146 3 172 219 MDL2122647.1 toll/interleukin-1 receptor domain-containing protein [Deltaproteobacteria bacterium] diamond 432 79.3 0.991172761664565 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32198000 32198000 PRJNA599208_P_NODE_15198_length_160_cov_1.544715_g15002_i0 PRJNA599208 15198 160 1.544715 2.471544 Myxococcota bacterium 2818507 Bacteria Bacteria 40.8 0.0397   NR MDG1479774.1 2818507 g15002 i0 36.2 0.88125 47 30 88.1 0 159 19 55 101 MDG1479774.1 hypothetical protein [Myxococcota bacterium] diamond 141 40.8 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;