RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA599208" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA599208 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29227484 29227484 PRJNA599208_P_NODE_10369_length_210_cov_2.497110_g10173_i0 PRJNA599208 10369 210 2.49711 5.243931 Spongiactinospora rosea 2248750 Bacteria Bacteria 40.8 0.0404   NR WP_113979713.1 2248750 g10173 i0 35.4 0.685714285714286 48 31 68.6 0 8 151 3 50 WP_113979713.1 hypothetical protein [Spongiactinospora rosea] diamond 144 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Spongiactinospora Spongiactinospora rosea
29542907 29542907 PRJNA599208_P_NODE_15910_length_155_cov_1.652542_g15714_i0 PRJNA599208 15910 155 1.652542 2.5614401 Gordonia sp. (in: high G+C Gram-positive bacteria) 84139 Bacteria Bacteria 43.1 0.00632   NR WP_415047170.1 84139 g15714 i0 42 0.967741935483871 50 25 96.8 2 151 2 16 61 WP_415047170.1 PH domain-containing protein [Gordonia sp. (in: high G+C Gram-positive bacteria)] diamond 150 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sp. (in: high G+C Gram-positive bacteria)
29985143 29985143 PRJNA599208_P_NODE_16751_length_150_cov_1.548673_g16555_i0 PRJNA599208 16751 150 1.548673 2.3230095 Streptosporangium carneum 47481 Bacteria Bacteria 40.8 0.0477   NR WP_271218651.1 47481 g16555 i0 46 1 50 20 86 2 15 143 99 148 WP_271218651.1 hotdog fold domain-containing protein [Streptosporangium carneum] diamond 150 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Streptosporangium Streptosporangium carneum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;