RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA599208" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 3 ✖

bioproject 1

  • PRJNA599208 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28564259 28564259 PRJNA599208_P_NODE_12207_length_186_cov_2.087248_g12011_i0 PRJNA599208 12207 186 2.087248 3.88228128 Brassica carinata 52824 Plants Plants 60.1 1.31e-8   NR KAL0719454.1 52824 g12011 i0 50 1 62 30 98.4 1 185 3 397 458 KAL0719454.1 hypothetical protein Bca4012_068778 [Brassica carinata] diamond 186 60.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica carinata
28798352 28798352 PRJNA599208_P_NODE_14547_length_165_cov_1.804688_g14351_i0 PRJNA599208 14547 165 1.804688 2.9777352 Poaceae 4479 Plants Plants 49.7 4.67e-5   NR KAK1620056.1 4521 g14351 i0 57.8 8.43636363636364 45 13 70.9 1 165 49 92 136 KAK1620056.1 hypothetical protein QYE76_025573 [Lolium multiflorum] diamond 1392 49.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium multiflorum
31799806 31799806 PRJNA599208_P_NODE_12137_length_187_cov_1.780000_g11941_i0 PRJNA599208 12137 187 1.78 3.3286 Chenopodiaceae 1804623 Plants Plants 44.7 0.00369   NR XP_048494445.1 3555 g11941 i0 50 1.17112299465241 36 18 57.8 0 183 76 247 282 XP_048494445.1 protein FAR1-RELATED SEQUENCE 7-like [Beta vulgaris subsp. vulgaris] diamond 219 45.1 0.991130820399113 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Caryophyllales Chenopodiaceae Beta Beta vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;