RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA599208" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA599208 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28279830 28279830 PRJNA599208_P_NODE_11886_length_190_cov_1.503268_g11690_i0 PRJNA599208 11886 190 1.503268 2.8562092 Candidatus Vogelbacteria bacterium CG1 2053638 Bacteria Bacteria 70.9 2.75e-14   NR PIR46661.1 1975042 g11690 i0 60.7 0.884210526315789 56 22 88.4 0 1 168 26 81 PIR46661.1 MAG: hypothetical protein COV07_03270 [Candidatus Vogelbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_45_14] diamond 168 70.9 1 Bacteria Bacteria candidate phyla   Candidatus Vogeliibacteriota         Candidatus Vogelbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_45_14
30711763 30711763 PRJNA599208_P_NODE_13314_length_175_cov_2.797101_g13118_i0 PRJNA599208 13314 175 2.797101 4.89492675 Candidatus Portnoybacteria bacterium CG1 2053593 Bacteria Bacteria 44.3 0.00175   NR PJE60061.1 1974816 g13118 i0 46.8 1.47428571428571 47 25 80.6 0 30 170 72 118 PJE60061.1 MAG: hypothetical protein COU85_00230 [Candidatus Portnoybacteria bacterium CG10_big_fil_rev_8_21_14_0_10_44_7] diamond 258 44.3 1 Bacteria Bacteria candidate phyla   Candidatus Portnoyibacteriota         Candidatus Portnoybacteria bacterium CG10_big_fil_rev_8_21_14_0_10_44_7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;