RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA599026" and tax_phylum = "Thermoproteota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA599026 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29101018 29101018 PRJNA599026_S_NODE_69588_length_161_cov_1.017857_g69132_i0 PRJNA599026 69588 161 1.017857 1.63874977 Saccharolobus solfataricus P2 273057 Archaea Archaea 41.2 0.0229   NR CAB57548.1 273057 g69132 i0 52.6 0.708074534161491 38 18 70.8 0 11 124 41 78 CAB57548.1 hypothetical protein [Saccharolobus solfataricus P2] diamond 114 41.2 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus solfataricus
29209150 29209150 PRJNA599026_S_NODE_32529_length_196_cov_1.040816_g32073_i0 PRJNA599026 32529 196 1.040816 2.03999936 root 1 Root_unresolved Root_unresolved 65.1 2.66e-10   NR WP_156015898.1 69656 g32073 i0 45.8 12.2142857142857 59 31 88.8 1 5 178 2 60 WP_156015898.1 aconitate hydratase AcnA [Sulfurisphaera ohwakuensis] diamond 2394 65.1 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfurisphaera Sulfurisphaera ohwakuensis
30333149 30333149 PRJNA599026_S_NODE_66992_length_162_cov_0.902655_g66536_i0 PRJNA599026 66992 162 0.902655 1.4623011 Candidatus Methanosuratincola petrocarbonis (ex Vanwonterghem et al. 2016) 1867261 Archaea Archaea 50.8 1.68e-5   NR MEN3051313.1 1867261 g66536 i0 47.6 1.16666666666667 63 21 94.4 2 158 6 113 175 MEN3051313.1 hypothetical protein [Candidatus Methanosuratincola petrocarbonis] diamond 189 50.8 1 Archaea   Thermoproteati Thermoproteota Methanosuratincolia Candidatus Methanomethylicales Candidatus Methanomethylicaceae Candidatus Methanosuratincola (ex Vanwonterghem et al. 2016) Candidatus Methanosuratincola petrocarbonis (ex Vanwonterghem et al. 2016)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;