contig_metadata
8 rows where analysis = "diamond", bioproject = "PRJNA597223" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22817816 | 22817816 | PRJNA597223_P_NODE_13018_length_471_cov_2.461009_g11264_i0 | PRJNA597223 | 13018 | 471 | 2.461009 | 11.59135239 | Leptospira weilii | 28184 | Bacteria | Bacteria | 266 | 5.149999999999999e-89 | NR | WP_155722658.1 | 28184 | g11264 | i0 | 87.1 | 4.45859872611465 | 140 | 18 | 89.2 | 0 | 48 | 467 | 1 | 140 | WP_155722658.1 catalase, partial [Leptospira weilii] | diamond | 2100 | 266 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira weilii | ||
| 28311652 | 28311652 | PRJNA597223_P_NODE_86366_length_151_cov_3.094828_g84520_i0 | PRJNA597223 | 86366 | 151 | 3.094828 | 4.67319028 | Treponema sp. | 166 | Bacteria | Bacteria | 70.1 | 2.39e-12 | NR | MEL3906214.1 | 166 | g84520 | i0 | 70 | 0.993377483443709 | 50 | 13 | 95.4 | 1 | 8 | 151 | 275 | 324 | MEL3906214.1 AAA family ATPase [Treponema sp.] | diamond | 150 | 70.1 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 28722118 | 28722118 | PRJNA597223_P_NODE_53527_length_190_cov_2.793548_g51681_i0 | PRJNA597223 | 53527 | 190 | 2.793548 | 5.3077412 | Treponema socranskii | 53419 | Bacteria | Bacteria | 42.4 | 0.0236 | NR | WP_021330526.1 | 53419 | g51681 | i0 | 87.5 | 0.378947368421053 | 24 | 3 | 37.9 | 0 | 73 | 2 | 22 | 45 | WP_021330526.1 hypothetical protein [Treponema socranskii] | diamond | 72 | 42.4 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema socranskii | ||
| 28753570 | 28753570 | PRJNA597223_P_NODE_84887_length_153_cov_0.923729_g83041_i0 | PRJNA597223 | 84887 | 153 | 0.923729 | 1.41330537 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 45.4 | 2.04e-4 | NR | NCB03411.1 | 2053615 | g83041 | i0 | 52.5 | 0.784313725490196 | 40 | 19 | 78.4 | 0 | 123 | 4 | 1 | 40 | NCB03411.1 hypothetical protein [Spirochaetia bacterium] | diamond | 120 | 45.4 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 29258522 | 29258522 | PRJNA597223_P_NODE_86089_length_151_cov_4.318966_g84243_i0 | PRJNA597223 | 86089 | 151 | 4.318966 | 6.52163866 | Thiospirochaeta perfilievii | 252967 | Bacteria | Bacteria | 58.5 | 2.35e-8 | NR | WP_342781933.1 | 252967 | g84243 | i0 | 52.1 | 2.78145695364238 | 71 | 9 | 91.4 | 1 | 9 | 146 | 192 | 262 | WP_342781933.1 IS3 family transposase [Thiospirochaeta perfilievii] | diamond | 420 | 58.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Thiospirochaeta | Thiospirochaeta perfilievii | ||
| 29732170 | 29732170 | PRJNA597223_P_NODE_54890_length_189_cov_2.350649_g53044_i0 | PRJNA597223 | 54890 | 189 | 2.350649 | 4.44272661 | Treponema lecithinolyticum | 53418 | Bacteria | Bacteria | 52.4 | 7.01e-6 | NR | WP_040848258.1 | 53418 | g53044 | i0 | 100 | 0.380952380952381 | 24 | 0 | 38.1 | 0 | 3 | 74 | 257 | 280 | WP_040848258.1 hypothetical protein [Treponema lecithinolyticum] | diamond | 72 | 52.4 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema lecithinolyticum | ||
| 31438598 | 31438598 | PRJNA597223_P_NODE_64596_length_180_cov_1.531034_g62750_i0 | PRJNA597223 | 64596 | 180 | 1.531034 | 2.7558612 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 112 | 5.1e-28 | NR | TXG82032.1 | 2202144 | g62750 | i0 | 93.3 | 1 | 60 | 4 | 100 | 0 | 180 | 1 | 130 | 189 | TXG82032.1 MAG: hypothetical protein E6R13_05540 [Spirochaetota bacterium] | diamond | 180 | 112 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 31723273 | 31723273 | PRJNA597223_P_NODE_52957_length_191_cov_2.365385_g51111_i0 | PRJNA597223 | 52957 | 191 | 2.365385 | 4.51788535 | Treponema socranskii | 53419 | Bacteria | Bacteria | 42.4 | 0.0255 | NR | WP_021329944.1 | 53419 | g51111 | i0 | 87 | 0.738219895287958 | 23 | 3 | 36.1 | 0 | 9 | 77 | 106 | 128 | WP_021329944.1 ComEC/Rec2 family competence protein [Treponema socranskii] | diamond | 141 | 42.4 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema socranskii |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;