RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA597223" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA597223 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29713789 29713789 PRJNA597223_P_NODE_87930_length_150_cov_2.973913_g86084_i0 PRJNA597223 87930 150 2.973913 4.4608695 Gemmatirosa 1706036 Bacteria Bacteria 47.4 2.49e-4   NR HEY0779105.1 2510638 g86084 i0 84 2 25 4 50 0 75 1 274 298 HEY0779105.1 Fe-S cluster assembly protein SufD [Gemmatirosa sp.] diamond 300 47.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
29890465 29890465 PRJNA597223_P_NODE_80011_length_158_cov_0.943089_g78165_i0 PRJNA597223 80011 158 0.943089 1.49008062 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 82.8 7.18e-19   NR HWP38410.1 2448054 g78165 i0 87.5 0.759493670886076 40 5 75.9 0 120 1 1 40 HWP38410.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Gemmatimonadales bacterium] diamond 120 82.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31881360 31881360 PRJNA597223_P_NODE_29557_length_278_cov_3.168724_g27711_i0 PRJNA597223 29557 278 3.168724 8.80905272 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 81.3 4.07e-18   NR HVD33131.1 2448054 g27711 i0 81.8 0.474820143884892 44 8 47.5 0 173 42 11 54 HVD33131.1 hypothetical protein [Gemmatimonadales bacterium] diamond 132 81.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32860919 32860919 PRJNA597223_P_NODE_74720_length_164_cov_1.689922_g72874_i0 PRJNA597223 74720 164 1.689922 2.77147208 Longimicrobiales bacterium 2910168 Bacteria Bacteria 45.4 0.00142   NR HUF12398.1 2910168 g72874 i0 43.6 0.713414634146341 39 22 71.3 0 47 163 322 360 HUF12398.1 hypothetical protein [Longimicrobiales bacterium] diamond 117 45.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;