RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA597223" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA597223 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6244288 6244288 PRJNA597223_P_NODE_35045_length_247_cov_1.632075_g33199_i0 PRJNA597223 35045 247 1.632075 4.03122525 Bodo saltans 75058 Euglenozoa other_Eukaryota 124 5.709999999999999e-31   NR AAC38978.1 75058 g33199 i0 70.7 0.995951417004049 82 24 99.6 0 247 2 292 373 AAC38978.1 cytochrome c oxidase subunit 1 [Bodo saltans] diamond 246 124 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
23521454 23521454 PRJNA597223_P_NODE_44439_length_212_cov_0.994350_g42593_i0 PRJNA597223 44439 212 0.99435 2.108022 Trypanosoma brucei 5691 Euglenozoa other_Eukaryota 99.4 4.5e-24   NR AAK52814.1 5691 g42593 i0 65.2 0.976415094339623 69 24 97.6 0 211 5 86 154 AAK52814.1 iron-containing superoxide dismutase [Trypanosoma brucei] diamond 207 99.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
26604783 26604783 PRJNA597223_P_NODE_77121_length_161_cov_1.801587_g75275_i0 PRJNA597223 77121 161 1.801587 2.90055507 Trypanosoma rangeli 5698 Euglenozoa other_Eukaryota 92.8 2.58e-20   NR AIL95136.1 5698 g75275 i0 81.1 4.71428571428571 53 10 98.8 0 3 161 224 276 AIL95136.1 cytochrome c oxidase subunit I [Trypanosoma rangeli] diamond 759 92.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma rangeli
29240597 29240597 PRJNA597223_P_NODE_56269_length_188_cov_2.098039_g54423_i0 PRJNA597223 56269 188 2.098039 3.94431332 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 1.25e-6   NR QLA09607.1 3039 g54423 i0 96 5.18617021276596 25 1 39.9 0 75 1 20 44 QLA09607.1 60S large subunit ribosomal protein uL14 [Euglena gracilis] diamond 975 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
31280489 31280489 PRJNA597223_P_NODE_81595_length_156_cov_1.462810_g79749_i0 PRJNA597223 81595 156 1.46281 2.2819836 Trypanosoma melophagium 715481 Euglenozoa other_Eukaryota 61.2 1.62e-9   NR XP_067191778.1 715481 g79749 i0 68.4 0.730769230769231 38 12 73.1 0 128 15 84 121 XP_067191778.1 uncharacterized protein LSM04_006687 [Trypanosoma melophagium] diamond 114 61.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma melophagium
32892302 32892302 PRJNA597223_P_NODE_64700_length_180_cov_1.103448_g62854_i0 PRJNA597223 64700 180 1.103448 1.9862064 Bodo saltans 75058 Euglenozoa other_Eukaryota 70.5 2.55e-12   NR CUG94009.1 75058 g62854 i0 56.1 0.95 57 25 95 0 9 179 322 378 CUG94009.1 unnamed protein product [Bodo saltans] diamond 171 70.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;