RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

25 rows where analysis = "diamond", bioproject = "PRJNA597223" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 25 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA597223 · 25 ✖

analysis 1

  • diamond · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18421113 18421113 PRJNA597223_P_NODE_47635_length_203_cov_1.875000_g45789_i0 PRJNA597223 47635 203 1.875 3.80625 Chordata 7711 Chordata Chordata 117 2.41e-29   NR XP_028915693.1 9258 g45789 i0 100 47.2610837438424 57 0 84.2 0 203 33 211 267 XP_028915693.1 LOW QUALITY PROTEIN: methyl-CpG-binding domain protein 2 [Ornithorhynchus anatinus] diamond 9594 117 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus
26744681 26744681 PRJNA597223_P_NODE_80281_length_157_cov_2.385246_g78435_i0 PRJNA597223 80281 157 2.385246 3.74483622 Anura 8342 Chordata Chordata 50.8 1.64e-5   NR XP_053568816.1 8345 g78435 i0 51 2.67515923566879 51 25 97.5 0 2 154 694 744 XP_053568816.1 LOW QUALITY PROTEIN: dynein axonemal heavy chain 11-like [Bombina bombina] diamond 420 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
26858732 26858732 PRJNA597223_S_NODE_1121_length_268_cov_2.816594_g1064_i0 PRJNA597223 1121 268 2.816594 7.54847192 Erpetoichthys calabaricus 27687 Chordata Chordata 74.7 1.75e-13   NR XP_051791274.1 27687 g1064 i0 74.5 3.42537313432836 51 12 56 1 39 188 156 206 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 918 75.1 0.994673768308922 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
27206001 27206001 PRJNA597223_P_NODE_52322_length_192_cov_3.273885_g50476_i0 PRJNA597223 52322 192 3.273885 6.2858592 Polypterus senegalus 55291 Chordata Chordata 59.7 1.95e-8   NR XP_039602201.1 55291 g50476 i0 60.9 4.328125 46 18 71.9 0 44 181 787 832 XP_039602201.1 uncharacterized protein K02A2.6-like [Polypterus senegalus] diamond 831 59.7 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
28153913 28153913 PRJNA597223_P_NODE_80665_length_157_cov_1.442623_g78819_i0 PRJNA597223 80665 157 1.442623 2.26491811 Pleurodeles waltl 8319 Chordata Chordata 41.6 0.0125   NR KAJ1093452.1 8319 g78819 i0 38 6.40127388535032 50 31 95.5 0 155 6 20 69 KAJ1093452.1 hypothetical protein NDU88_006553, partial [Pleurodeles waltl] diamond 1005 42 0.990476190476191 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
28564204 28564204 PRJNA597223_P_NODE_52707_length_192_cov_1.222930_g50861_i0 PRJNA597223 52707 192 1.22293 2.3480256 Dendropsophus ebraccatus 150705 Chordata Chordata 85.5 1.62e-17   NR XP_069840942.1 150705 g50861 i0 55.6 4.921875 63 28 98.4 0 190 2 1893 1955 XP_069840942.1 uncharacterized protein [Dendropsophus ebraccatus] diamond 945 85.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Dendropsophus Dendropsophus ebraccatus
28627531 28627531 PRJNA597223_P_NODE_32427_length_260_cov_4.226667_g30581_i0 PRJNA597223 32427 260 4.226667 10.9893342 Chionomys nivalis 269649 Chordata Chordata 55.5 4.43e-8   NR XP_057619686.1 269649 g30581 i0 69.7 0.761538461538461 33 10 38.1 0 229 131 4 36 XP_057619686.1 humanin-like protein [Chionomys nivalis] diamond 198 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Chionomys Chionomys nivalis
28690646 28690646 PRJNA597223_P_NODE_3127_length_970_cov_6.031016_g2218_i0 PRJNA597223 3127 970 6.031016 58.5008552 Naja naja 35670 Chordata Chordata 52 0.00171   NR KAG8140109.1 35670 g2218 i0 29.2 0.371134020618557 120 80 36.5 2 583 936 92 208 KAG8140109.1 hypothetical protein E2320_002859 [Naja naja] diamond 360 52 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Naja Naja naja
29385188 29385188 PRJNA597223_P_NODE_48709_length_200_cov_2.666667_g46863_i0 PRJNA597223 48709 200 2.666667 5.333334 Staurois parvus 386267 Chordata Chordata 41.2 0.00669   NR CAI9622433.1 386267 g46863 i0 75 0.3 20 5 30 0 199 140 13 32 CAI9622433.1 unnamed protein product, partial [Staurois parvus] diamond 60 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
29542833 29542833 PRJNA597223_P_NODE_31390_length_266_cov_4.359307_g29544_i0 PRJNA597223 31390 266 4.359307 11.59575662 Bufotes viridis 30338 Chordata Chordata 80.5 3.02e-16   NR CAK8641430.1 30338 g29544 i0 54 2.26691729323308 87 38 97 2 5 262 129 214 CAK8641430.1 Transposable element Tc3 transposase [Bufotes viridis] diamond 603 81.3 0.990159901599016 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
29637289 29637289 PRJNA597223_P_NODE_1950_length_1219_cov_4.576014_g1195_i1 PRJNA597223 1950 1219 4.576014 55.78161066 Xenopus tropicalis 8364 Chordata Chordata 227 7.92e-62   NR XP_017945114.2 8364 g1195 i1 42.3 4.35602953240361 291 161 70.1 3 1207 353 1133 1422 XP_017945114.2 uncharacterized protein LOC108644811 [Xenopus tropicalis] diamond 5310 227 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
30111388 30111388 PRJNA597223_P_NODE_88512_length_150_cov_1.652174_g86666_i0 PRJNA597223 88512 150 1.652174 2.478261 Bos mutus 72004 Chordata Chordata 49.3 6.03e-6   NR ELR54977.1 72004 g86666 i0 66.7 0.66 33 11 66 0 100 2 47 79 ELR54977.1 hypothetical protein M91_10675, partial [Bos mutus] diamond 99 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos mutus
30440865 30440865 PRJNA597223_P_NODE_24413_length_317_cov_4.081560_g22569_i0 PRJNA597223 24413 317 4.08156 12.9385452 root 1 Root_unresolved Root_unresolved 85.1 1.2e-16   NR XP_042201887.1 7868 g22569 i0 41.9 3.72870662460568 105 60 98.4 1 1 312 643 747 XP_042201887.1 uncharacterized protein LOC121851863 [Callorhinchus milii] diamond 1182 85.1 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
30585210 30585210 PRJNA597223_P_NODE_4853_length_792_cov_3.980185_g3662_i0 PRJNA597223 4853 792 3.980185 31.5230652 Branchiostoma belcheri 7741 Chordata Chordata 217 2.45e-60   NR KAI8503986.1 7741 g3662 i0 44.3 12.5681818181818 237 128 89.8 1 82 792 880 1112 KAI8503986.1 Leucine-rich repeat-containing protein 63 [Branchiostoma belcheri] diamond 9954 217 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
30743333 30743333 PRJNA597223_P_NODE_2014_length_1195_cov_4.759483_g1195_i2 PRJNA597223 2014 1195 4.759483 56.87582185 Xenopus tropicalis 8364 Chordata Chordata 214 1.52e-57   NR XP_017945114.2 8364 g1195 i2 41.6 1.43598326359833 286 160 70.3 3 4 843 1138 1422 XP_017945114.2 uncharacterized protein LOC108644811 [Xenopus tropicalis] diamond 1716 214 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
30838117 30838117 PRJNA597223_P_NODE_12834_length_475_cov_2.990909_g11085_i0 PRJNA597223 12834 475 2.990909 14.20681775 Bufotes viridis 30338 Chordata Chordata 65.1 2.02e-9   NR CAK8641430.1 30338 g11085 i0 52.3 0.631578947368421 65 29 40.4 2 2 193 157 220 CAK8641430.1 Transposable element Tc3 transposase [Bufotes viridis] diamond 300 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
30869677 30869677 PRJNA597223_P_NODE_30374_length_273_cov_2.214286_g28528_i0 PRJNA597223 30374 273 2.214286 6.04500078 Xenopus laevis 8355 Chordata Chordata 108 2.38e-25   NR XP_041419736.1 8355 g28528 i0 65 1.85714285714286 80 28 87.9 0 243 4 50 129 XP_041419736.1 uncharacterized protein LOC121393946 [Xenopus laevis] diamond 507 108 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
31216869 31216869 PRJNA597223_P_NODE_2015_length_1195_cov_4.658621_g1195_i3 PRJNA597223 2015 1195 4.658621 55.67052095 Xenopus tropicalis 8364 Chordata Chordata 222 4.53e-60   NR XP_017945114.2 8364 g1195 i3 42.4 2.13389121338912 290 152 70.3 4 4 843 1138 1422 XP_017945114.2 uncharacterized protein LOC108644811 [Xenopus tropicalis] diamond 2550 222 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
31312102 31312102 PRJNA597223_P_NODE_1835_length_1251_cov_4.421875_g1195_i0 PRJNA597223 1835 1251 4.421875 55.31765625 Xenopus tropicalis 8364 Chordata Chordata 222 7.94e-60   NR XP_017945114.2 8364 g1195 i0 42.4 2.03836930455636 290 152 67.1 4 4 843 1138 1422 XP_017945114.2 uncharacterized protein LOC108644811 [Xenopus tropicalis] diamond 2550 222 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
31863042 31863042 PRJNA597223_P_NODE_55057_length_189_cov_2.207792_g53211_i0 PRJNA597223 55057 189 2.207792 4.17272688 root 1 Root_unresolved Root_unresolved 125 1.7199999999999995e-31   NR XP_030109804.2 10090 g53211 i0 100 8.85714285714286 62 0 98.4 0 188 3 55 116 XP_030109804.2 uncharacterized protein Gm52666 [Mus musculus] diamond 1674 125 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
32084698 32084698 PRJNA597223_P_NODE_9398_length_567_cov_3.849624_g7789_i0 PRJNA597223 9398 567 3.849624 21.82736808 Chordata 7711 Chordata Chordata 155 5.53e-40   NR XP_061431776.1 7753 g7789 i0 45.5 3.76719576719577 178 96 93.7 1 34 564 529 706 XP_061431776.1 uncharacterized protein LOC133357699, partial [Lethenteron reissneri] diamond 2136 156 0.993589743589744 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lethenteron Lethenteron reissneri
32324831 32324831 PRJNA597223_S_NODE_4219_length_160_cov_2.049587_g4162_i0 PRJNA597223 4219 160 2.049587 3.2793392 Ovis aries 9940 Chordata Chordata 42.7 0.0119   NR XDA78294.1 9940 g4162 i0 42 0.9375 50 28 91.9 1 152 6 951 1000 XDA78294.1 hypothetical protein R6Z07_008474 [Ovis aries] diamond 150 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
32369704 32369704 PRJNA597223_S_NODE_2539_length_193_cov_1.428571_g2482_i0 PRJNA597223 2539 193 1.428571 2.75714203 Equus 9789 Chordata Chordata 43.1 0.0137   NR XP_070132068.1 9796 g2482 i0 52 1.55440414507772 50 23 77.7 1 191 42 155 203 XP_070132068.1 clathrin heavy chain 2 isoform X1 [Equus caballus] diamond 300 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
32671914 32671914 PRJNA597223_P_NODE_29400_length_279_cov_3.327869_g27554_i0 PRJNA597223 29400 279 3.327869 9.28475451 Branchiostoma lanceolatum 7740 Chordata Chordata 96.7 6.46e-21   NR CAH1225323.1 7740 g27554 i0 47.3 3.91397849462366 91 48 97.8 0 278 6 263 353 CAH1225323.1 NYNRIN [Branchiostoma lanceolatum] diamond 1092 96.7 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
32829499 32829499 PRJNA597223_P_NODE_18100_length_385_cov_7.811429_g16278_i0 PRJNA597223 18100 385 7.811429 30.07400165 Polypterus senegalus 55291 Chordata Chordata 43.5 0.0307   NR KAG2471189.1 55291 g16278 i0 57.1 0.272727272727273 35 15 27.3 0 189 293 92 126 KAG2471189.1 TCB1 transposase, partial [Polypterus senegalus] diamond 105 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;