RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA597223" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA597223 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26636596 26636596 PRJNA597223_P_NODE_57421_length_187_cov_1.052632_g55575_i0 PRJNA597223 57421 187 1.052632 1.96842184 Chloroflexota bacterium 2026724 Bacteria Bacteria 62.4 1.4e-10   NR MEX0629275.1 2026724 g55575 i0 55.7 1.9572192513369 61 27 97.9 0 3 185 19 79 MEX0629275.1 CopG family transcriptional regulator [Chloroflexota bacterium] diamond 366 62.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27048280 27048280 PRJNA597223_P_NODE_73862_length_165_cov_1.992308_g72016_i0 PRJNA597223 73862 165 1.992308 3.2873082 Candidatus Ribeiella danica 3140698 Bacteria Bacteria 85.5 1.09e-17   NR MBK9714445.1 3140698 g72016 i0 71.7 6.74545454545455 53 15 96.4 0 160 2 76 128 MBK9714445.1 flotillin family protein [Candidatus Ribeiella danica] diamond 1113 85.5 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae Candidatus Ribeiella Candidatus Ribeiella danica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;