RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA597223" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA597223 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26681604 26681604 PRJNA597223_P_NODE_77801_length_160_cov_2.144000_g75955_i0 PRJNA597223 77801 160 2.144 3.4304 Bacteria 2 Bacteria Bacteria 42.4 0.00935   NR WP_153016522.1 195 g75955 i0 41.2 25.0875 51 30 95.6 0 8 160 15 65 WP_153016522.1 phosphotransferase, partial [Campylobacter coli] diamond 4014 42.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
27585343 27585343 PRJNA597223_P_NODE_35804_length_243_cov_2.596154_g33958_i0 PRJNA597223 35804 243 2.596154 6.30865422 Helicobacter pylori 210 Bacteria Bacteria 64.3 1.01e-11   NR GAA6795254.1 210 g33958 i0 74.4 0.481481481481481 39 9 48.1 1 120 4 9 46 GAA6795254.1 hypothetical protein Kyoto200A_0170 [Helicobacter pylori] diamond 117 64.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28595907 28595907 PRJNA597223_P_NODE_54827_length_189_cov_2.415584_g52981_i0 PRJNA597223 54827 189 2.415584 4.56545376 Sulfurovum sp. 1969726 Bacteria Bacteria 61.6 2.87e-9   NR RUM72688.1 1969726 g52981 i0 39.8 1.47619047619048 93 24 96.8 1 184 2 97 189 RUM72688.1 MAG: carboxyvinyl-carboxyphosphonate phosphorylmutase [Sulfurovum sp.] diamond 279 61.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp.
30030108 30030108 PRJNA597223_P_NODE_48371_length_201_cov_2.114458_g46525_i0 PRJNA597223 48371 201 2.114458 4.25006058 Bacteria 2 Bacteria Bacteria 135 1.87e-39   NR WP_214101057.1 197 g46525 i0 100 3.94029850746269 66 0 98.5 0 2 199 23 88 WP_214101057.1 AAA family ATPase, partial [Campylobacter jejuni] diamond 792 135 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;