RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA597223" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA597223 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10773512 10773512 PRJNA597223_P_NODE_49849_length_198_cov_1.128834_g48003_i0 PRJNA597223 49849 198 1.128834 2.23509132 Eurythoe complanata 167815 Annelida Annelida 121 8.069999999999999e-34   NR ABW23230.1 167815 g48003 i0 86.4 3.93939393939394 66 9 100 0 1 198 50 115 ABW23230.1 ribosomal protein rpl31 [Eurythoe complanata] diamond 780 121 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Eunicida Amphinomidae Eurythoe Eurythoe complanata
18421019 18421019 PRJNA597223_P_NODE_40715_length_224_cov_0.962963_g38869_i0 PRJNA597223 40715 224 0.962963 2.15703712 Lumbricidae 6392 Annelida Annelida 118 9.539999999999999e-30   NR YP_010481492.1 538895 g38869 i0 77 8.91964285714286 74 17 99.1 0 224 3 1 74 YP_010481492.1 cytochrome b [Eisenia nordenskioldi] diamond 1998 119 0.991596638655462 Eukaryota Opisthokonta Metazoa Annelida Clitellata Crassiclitellata Lumbricidae Eisenia Eisenia nordenskioldi
26903509 26903509 PRJNA597223_P_NODE_50781_length_196_cov_1.149068_g48935_i0 PRJNA597223 50781 196 1.149068 2.25217328 Metazoa 33208 Annelida Annelida 67 2.25e-11   NR XP_009017047.1 6412 g48935 i0 90.3 7.17857142857143 31 3 47.4 0 3 95 214 244 XP_009017047.1 hypothetical protein HELRODRAFT_186995 [Helobdella robusta] diamond 1407 67 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Rhynchobdellida Glossiphoniidae Helobdella Helobdella robusta
32779660 32779660 PRJNA597223_P_NODE_83320_length_154_cov_1.840336_g81474_i0 PRJNA597223 83320 154 1.840336 2.83411744 root 1 Root_unresolved Root_unresolved 98.6 7.9999999999999985e-25   NR CAH1788156.1 6347 g81474 i0 92.2 15.8961038961039 51 4 99.4 0 2 154 49 99 CAH1788156.1 unnamed protein product [Owenia fusiformis] diamond 2448 98.6 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;