RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA597223" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA597223 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26890236 26890236 PRJNA597223_P_NODE_48501_length_201_cov_1.385542_g46655_i0 PRJNA597223 48501 201 1.385542 2.78493942 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 100 2.36e-24   NR KYR02481.1 361077 g46655 i0 75.8 1.85074626865672 62 15 92.5 0 6 191 41 102 KYR02481.1 LIM-type zinc finger-containing protein [Tieghemostelium lacteum] diamond 372 100 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
29132628 29132628 PRJNA597223_P_NODE_23689_length_324_cov_2.003460_g21845_i0 PRJNA597223 23689 324 2.00346 6.4912104 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 59.3 1.5e-7   NR PRP81517.1 1890364 g21845 i0 42 0.638888888888889 69 35 63.9 3 226 20 437 500 PRP81517.1 hypothetical protein PROFUN_10879 [Planoprotostelium fungivorum] diamond 207 59.3 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30205951 30205951 PRJNA597223_P_NODE_32392_length_261_cov_1.181416_g30546_i0 PRJNA597223 32392 261 1.181416 3.08349576 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 75.1 9.56e-14   NR XP_004339668.1 1257118 g30546 i0 43.9 0.942528735632184 82 46 94.3 0 252 7 182 263 XP_004339668.1 Ras subfamily protein, putative [Acanthamoeba castellanii str. Neff] diamond 246 75.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;