RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA596870" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA596870 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10772395 10772395 PRJNA596870_P_NODE_11449_length_377_cov_1.013158_g11316_i0 PRJNA596870 11449 377 1.013158 3.81960566 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 211 1.27e-65   NR XP_044557880.1 5763 g11316 i0 80.8 2.9840848806366 125 24 99.5 0 2 376 17 141 XP_044557880.1 uncharacterized protein FDP41_008374 [Naegleria fowleri] diamond 1125 211 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
26921623 26921623 PRJNA596870_P_NODE_29682_length_251_cov_0.865169_g29549_i0 PRJNA596870 29682 251 0.865169 2.17157419 Acrasis kona 1008807 Heterolobosea other_Eukaryota 107 7.71e-28   NR KAL0479597.1 1008807 g29549 i0 59 1.9840637450199201 83 34 99.2 0 249 1 53 135 KAL0479597.1 NAD-dependent protein deacetylase Sirtuin [Acrasis kona] diamond 498 107 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
27409474 27409474 PRJNA596870_P_NODE_31083_length_249_cov_1.698864_g30950_i0 PRJNA596870 31083 249 1.698864 4.23017136 Naegleria 5761 Heterolobosea other_Eukaryota 88.2 3.82e-18   NR XP_044558917.1 5763 g30950 i0 46.3 3.96385542168675 82 44 98.8 0 248 3 275 356 XP_044558917.1 uncharacterized protein FDP41_006814 [Naegleria fowleri] diamond 987 88.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
29826982 29826982 PRJNA596870_P_NODE_28391_length_254_cov_1.226519_g28258_i0 PRJNA596870 28391 254 1.226519 3.11535826 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 98.2 1.22e-22   NR XP_002679493.1 5762 g28258 i0 84.2 0.673228346456693 57 8 67.3 1 252 82 86 141 XP_002679493.1 VHP domain-containing protein [Naegleria gruberi] diamond 171 98.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31881347 31881347 PRJNA596870_P_NODE_29077_length_251_cov_0.865169_g28944_i0 PRJNA596870 29077 251 0.865169 2.17157419 Acrasis kona 1008807 Heterolobosea other_Eukaryota 80.1 2.91e-15   NR KAL0483870.1 1008807 g28944 i0 51.2 0.9800796812749 82 39 96.8 1 246 4 259 340 KAL0483870.1 Nlrc3 [Acrasis kona] diamond 246 80.1 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;