RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA596870" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA596870 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26953097 26953097 PRJNA596870_P_NODE_14962_length_338_cov_1.162264_g14829_i0 PRJNA596870 14962 338 1.162264 3.92845232 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 186 1.83e-56   NR XP_004333661.1 1257118 g14829 i0 75 0.994082840236686 112 28 99.4 0 2 337 31 142 XP_004333661.1 actin bundling protein [Acanthamoeba castellanii str. Neff] diamond 336 186 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27585333 27585333 PRJNA596870_P_NODE_40004_length_241_cov_0.916667_g39871_i0 PRJNA596870 40004 241 0.916667 2.20916747 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 95.1 1.31e-20   NR XP_004341800.1 1257118 g39871 i0 62.8 0.970954356846473 78 28 95.9 1 239 9 1004 1081 XP_004341800.1 Poly(ADPribose) polymerase catalytic domain containing protein [Acanthamoeba castellanii str. Neff] diamond 234 95.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28406330 28406330 PRJNA596870_P_NODE_30826_length_250_cov_0.870056_g30693_i0 PRJNA596870 30826 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47 0.00128   NR XP_004336035.1 1257118 g30693 i0 47.7 0.528 44 20 51.6 2 137 9 637 678 XP_004336035.1 uncharacterized protein ACA1_366340 [Acanthamoeba castellanii str. Neff] diamond 132 47 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30440862 30440862 PRJNA596870_P_NODE_31953_length_249_cov_0.875000_g31820_i0 PRJNA596870 31953 249 0.875 2.17875 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.9 0.0124   NR XP_004337603.1 1257118 g31820 i0 60.5 1.78313253012048 38 15 45.8 0 114 1 72 109 XP_004337603.1 ribosomal protein L23, putative [Acanthamoeba castellanii str. Neff] diamond 444 43.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31343835 31343835 PRJNA596870_P_NODE_30376_length_250_cov_0.870056_g30243_i0 PRJNA596870 30376 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 99 4.1e-22   NR XP_004346040.1 1257118 g30243 i0 64.6 0.984 82 28 97.2 1 7 249 357 438 XP_004346040.1 Solute carrier family 29 (nucleoside transporters), member 1, putative [Acanthamoeba castellanii str. Neff] diamond 246 99 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31691682 31691682 PRJNA596870_P_NODE_29377_length_251_cov_0.865169_g29244_i0 PRJNA596870 29377 251 0.865169 2.17157419 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 106 2.07e-25   NR XP_004334145.1 1257118 g29244 i0 62.8 0.932270916334661 78 29 93.2 0 1 234 129 206 XP_004334145.1 ATPase family associated with various cellular activities (AAA) domain containing protein [Acanthamoeba castellanii str. Neff] diamond 234 106 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;