RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA596870" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA596870 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1843839 1843839 PRJNA596870_P_NODE_18902_length_306_cov_1.652361_g18769_i0 PRJNA596870 18902 306 1.652361 5.05622466 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 106 9.4e-27   NR AET50562.1 5802 g18769 i0 56.9 8 102 28 98 2 302 3 24 111 AET50562.1 hypothetical protein [Eimeria tenella] diamond 2448 107 0.990654205607477 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
19694926 19694926 PRJNA596870_P_NODE_33016_length_248_cov_0.880000_g32883_i0 PRJNA596870 33016 248 0.88 2.1824 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 139 2.08e-40   NR XP_013335580.1 5804 g32883 i0 84.1 35.7096774193548 82 13 99.2 0 2 247 21 102 XP_013335580.1 ribosomal protein L11, putative, partial [Eimeria maxima] diamond 8856 140 0.992857142857143 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
25366812 25366812 PRJNA596870_P_NODE_26500_length_264_cov_1.209424_g26367_i0 PRJNA596870 26500 264 1.209424 3.19287936 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 155 2.66e-43   NR KNG77494.1 580059 g26367 i0 84.1 183.988636363636 88 14 100 0 264 1 256 343 KNG77494.1 26S proteasome regulatory subunit 4 [Plasmodium falciparum IGH-CR14] diamond 48573 156 0.993589743589744 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;