RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA596870" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA596870 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20970418 20970418 PRJNA596870_P_NODE_16637_length_323_cov_1.536000_g16504_i0 PRJNA596870 16637 323 1.536 4.96128 Opisthokonta 33154 Annelida Annelida 185 1.62e-56   NR AAD42071.1 34590 g16504 i0 84.1 318.018575851393 107 17 99.4 0 322 2 127 233 AAD42071.1 beta-tubulin, partial [Chaetopterus variopedatus] diamond 102720 186 0.99462365591397806 Eukaryota Opisthokonta Metazoa Annelida Polychaeta   Chaetopteridae Chaetopterus Chaetopterus variopedatus
22817643 22817643 PRJNA596870_P_NODE_13298_length_354_cov_2.156584_g13165_i0 PRJNA596870 13298 354 2.156584 7.63430736 Metazoa 33208 Annelida Annelida 132 3.4799999999999997e-37   NR ABW90366.1 6446 g13165 i0 80.2 3.08474576271186 91 18 77.1 0 274 2 1 91 ABW90366.1 putative ribosomal protein L35 [Sipunculus nudus] diamond 1092 133 0.992481203007519 Eukaryota Opisthokonta Metazoa Annelida Sipuncula Golfingiida Sipunculidae Sipunculus Sipunculus nudus
31104096 31104096 PRJNA596870_P_NODE_33055_length_248_cov_0.880000_g32922_i0 PRJNA596870 33055 248 0.88 2.1824 Metazoa 33208 Annelida Annelida 90.1 8.63e-19   NR KAK2162927.1 53620 g32922 i0 56.3 4.86290322580645 80 35 96.8 0 240 1 1806 1885 KAK2162927.1 hypothetical protein LSH36_89g02118 [Paralvinella palmiformis] diamond 1206 90.9 0.991199119911991 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Terebellida Alvinellidae Paralvinella Paralvinella palmiformis
32197941 32197941 PRJNA596870_P_NODE_33858_length_247_cov_0.885057_g33725_i0 PRJNA596870 33858 247 0.885057 2.18609079 Ridgeia piscesae 27915 Annelida Annelida 52.8 1.13e-5   NR KAK2192521.1 27915 g33725 i0 74.2 0.376518218623482 31 8 37.7 0 171 79 266 296 KAK2192521.1 hypothetical protein NP493_28g03019 [Ridgeia piscesae] diamond 93 52.8 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Siboglinidae Ridgeia Ridgeia piscesae
32211365 32211365 PRJNA596870_P_NODE_25878_length_267_cov_1.453608_g25745_i0 PRJNA596870 25878 267 1.453608 3.88113336 Metazoa 33208 Annelida Annelida 82.4 1.21e-16   NR CAH1796063.1 6347 g25745 i0 66.1 6.73033707865169 59 20 66.3 0 87 263 2 60 CAH1796063.1 unnamed protein product [Owenia fusiformis] diamond 1797 83.2 0.990384615384615 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis
32356394 32356394 PRJNA596870_P_NODE_30699_length_250_cov_0.870056_g30566_i0 PRJNA596870 30699 250 0.870056 2.17514 Paralvinella palmiformis 53620 Annelida Annelida 117 5.2399999999999995e-30   NR KAK2147523.1 53620 g30566 i0 69.9 1.692 73 22 87.6 0 219 1 10 82 KAK2147523.1 hypothetical protein LSH36_548g00001 [Paralvinella palmiformis] diamond 423 117 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Terebellida Alvinellidae Paralvinella Paralvinella palmiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;