RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where analysis = "diamond", bioproject = "PRJNA596870" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 29 ✖

tax_kingdom 1

bioproject 1

  • PRJNA596870 · 29 ✖

analysis 1

  • diamond · 29 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
568308 568308 PRJNA596870_P_NODE_22321_length_285_cov_1.268868_g22188_i0 PRJNA596870 22321 285 1.268868 3.6162738 Microbacterium laevaniformans 36807 Bacteria Bacteria 166 3.47e-45   NR WP_061683168.1 36807 g22188 i0 95.7 0.989473684210526 94 4 98.9 0 284 3 160 253 WP_061683168.1 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [Microbacterium laevaniformans] diamond 282 166 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium laevaniformans
26840322 26840322 PRJNA596870_P_NODE_4201_length_583_cov_1.286275_g4070_i0 PRJNA596870 4201 583 1.286275 7.49898325 Streptomyces 1883 Bacteria Bacteria 210 6.93e-62   NR WP_142217653.1 2768454 g4070 i0 56.7 5.94854202401372 194 81 99.3 2 581 3 123 314 WP_142217653.1 S8 family peptidase [Streptomyces sp. SLBN-118] diamond 3468 210 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SLBN-118
26858702 26858702 PRJNA596870_P_NODE_40581_length_232_cov_3.037736_g40448_i0 PRJNA596870 40581 232 3.037736 7.04754752 Micrococcus cohnii 993416 Bacteria Bacteria 109 2.1e-27   NR WP_158496904.1 993416 g40448 i0 64.5 1.96551724137931 76 27 98.3 0 3 230 82 157 WP_158496904.1 hypothetical protein [Micrococcus cohnii] diamond 456 109 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus cohnii
26872031 26872031 PRJNA596870_P_NODE_21061_length_291_cov_2.000000_g20928_i0 PRJNA596870 21061 291 2 5.82 Microbacterium 33882 Bacteria Bacteria 103 3.43e-26   NR WP_239640025.1 95616 g20928 i0 53.6 1.98969072164948 97 44 99 1 289 2 17 113 WP_239640025.1 histone-like nucleoid-structuring protein Lsr2 [Microbacterium sp. B24] diamond 579 104 0.990384615384615 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. B24
27048260 27048260 PRJNA596870_P_NODE_35322_length_245_cov_1.784884_g35189_i0 PRJNA596870 35322 245 1.784884 4.3729658 Streptomyces longwoodensis 68231 Bacteria Bacteria 42.4 0.0347   NR WP_067237168.1 68231 g35189 i0 33 1.07755102040816 88 43 88.2 2 231 16 52 139 WP_067237168.1 hypothetical protein [Streptomyces longwoodensis] diamond 264 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces longwoodensis
27093182 27093182 PRJNA596870_P_NODE_21482_length_289_cov_1.421296_g21349_i0 PRJNA596870 21482 289 1.421296 4.10754544 root 1 Root_unresolved Root_unresolved 43.9 0.00485   NR MES9187225.1 1747 g21349 i0 50 2.39792387543253 34 17 35.3 0 279 178 33 66 MES9187225.1 hypothetical protein [Cutibacterium acnes] diamond 693 44.3 0.99097065462754 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
27522089 27522089 PRJNA596870_P_NODE_22903_length_282_cov_1.387560_g22770_i0 PRJNA596870 22903 282 1.38756 3.9129192 Microbacterium 33882 Bacteria Bacteria 193 5.29e-60   NR WP_016463377.1 33882 g22770 i0 100 1 94 0 100 0 282 1 108 201 WP_016463377.1 MULTISPECIES: glycosyltransferase family 2 protein [Microbacterium] diamond 282 193 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium  
27648632 27648632 PRJNA596870_P_NODE_36084_length_245_cov_0.895349_g35951_i0 PRJNA596870 36084 245 0.895349 2.19360505 Microbacteriaceae bacterium 1873462 Bacteria Bacteria 42.7 0.037   NR MBX3311919.1 1873462 g35951 i0 38.3 0.575510204081633 47 29 57.6 0 10 150 171 217 MBX3311919.1 LysM peptidoglycan-binding domain-containing protein [Microbacteriaceae bacterium] diamond 141 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae   Microbacteriaceae bacterium
28153880 28153880 PRJNA596870_P_NODE_24285_length_275_cov_1.282178_g24152_i0 PRJNA596870 24285 275 1.282178 3.5259895 Microbacterium sp. 51671 Bacteria Bacteria 171 2.999999999999999e-47   NR WP_292891734.1 51671 g24152 i0 89 0.992727272727273 91 10 99.3 0 1 273 1005 1095 WP_292891734.1 tubulin-like doman-containing protein [Microbacterium sp.] diamond 273 171 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp.
28248192 28248192 PRJNA596870_P_NODE_18426_length_310_cov_0.974684_g18293_i0 PRJNA596870 18426 310 0.974684 3.0215204 Actinophytocola sp. 1872138 Bacteria Bacteria 80.5 1.15e-15   NR WP_324917453.1 1872138 g18293 i0 48.4 0.9 93 46 89 2 276 1 142 233 WP_324917453.1 type VII secretion target [Actinophytocola sp.] diamond 279 80.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinophytocola Actinophytocola sp.
28374616 28374616 PRJNA596870_P_NODE_32726_length_248_cov_0.880000_g32593_i0 PRJNA596870 32726 248 0.88 2.1824 Microbacteriaceae bacterium 1873462 Bacteria Bacteria 56.2 3.14e-7   NR MBX9717786.1 1873462 g32593 i0 47.2 0.870967741935484 72 35 87.1 2 236 21 11 79 MBX9717786.1 hypothetical protein [Microbacteriaceae bacterium] diamond 216 56.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae   Microbacteriaceae bacterium
28595888 28595888 PRJNA596870_P_NODE_34187_length_247_cov_0.885057_g34054_i0 PRJNA596870 34187 247 0.885057 2.18609079 Corynebacterium bovis 36808 Bacteria Bacteria 70.9 1.3e-12   NR WP_342009314.1 36808 g34054 i0 60.3 3.26720647773279 63 23 74.1 1 191 9 37 99 WP_342009314.1 DUF6668 family protein [Corynebacterium bovis] diamond 807 70.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium bovis
28784973 28784973 PRJNA596870_P_NODE_36187_length_245_cov_0.895349_g36054_i0 PRJNA596870 36187 245 0.895349 2.19360505 Actinomycetota bacterium 2900548 Bacteria Bacteria 76.6 5.52e-16   NR MBS1889909.1 2900548 g36054 i0 63.6 0.673469387755102 55 20 67.3 0 169 5 45 99 MBS1889909.1 hypothetical protein [Actinomycetota bacterium] diamond 165 76.6 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28974729 28974729 PRJNA596870_P_NODE_30608_length_250_cov_0.870056_g30475_i0 PRJNA596870 30608 250 0.870056 2.17514 Microbacterium sp. AG79 51671 Bacteria Bacteria 146 2.04e-42   NR WP_183043603.1 2183995 g30475 i0 98.6 1.788 70 1 84 0 40 249 1 70 WP_183043603.1 TetR/AcrR family transcriptional regulator [Microbacterium sp. AG790] diamond 447 146 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. AG790
29037981 29037981 PRJNA596870_P_NODE_22868_length_282_cov_1.473684_g22735_i0 PRJNA596870 22868 282 1.473684 4.15578888 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 44.3 0.0164   NR HEY3669564.1 2080302 g22735 i0 52.6 0.404255319148936 38 18 40.4 0 215 102 52 89 HEY3669564.1 aldehyde dehydrogenase family protein [Acidimicrobiia bacterium] diamond 114 44.3 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
29795351 29795351 PRJNA596870_P_NODE_18311_length_310_cov_2.531646_g18178_i0 PRJNA596870 18311 310 2.531646 7.8481026 Paenarthrobacter nicotinovorans 29320 Bacteria Bacteria 90.1 1.46e-20   NR WP_156369771.1 29320 g18178 i0 98 0.929032258064516 49 1 47.4 0 162 308 62 110 WP_156369771.1 hypothetical protein [Paenarthrobacter nicotinovorans] diamond 288 90.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Paenarthrobacter Paenarthrobacter nicotinovorans
30048036 30048036 PRJNA596870_P_NODE_37791_length_243_cov_0.905882_g37658_i0 PRJNA596870 37791 243 0.905882 2.20129326 Kitasatospora sp. NBC_ 1871188 Bacteria Bacteria 72.4 9.68e-14   NR WP_371484231.1 2975963 g37658 i0 51.9 2.02469135802469 81 36 97.5 3 6 242 3 82 WP_371484231.1 translationally-controlled tumor protein [Kitasatospora sp. NBC_00315] diamond 492 72.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. NBC_00315
30679908 30679908 PRJNA596870_P_NODE_20113_length_298_cov_1.026667_g19980_i0 PRJNA596870 20113 298 1.026667 3.05946766 Streptomyces 1883 Bacteria Bacteria 51.2 2.72e-5   NR WP_285507555.1 1883 g19980 i0 48.8 0.865771812080537 43 22 43.3 0 131 3 50 92 WP_285507555.1 MULTISPECIES: nuclear transport factor 2 family protein [Streptomyces] diamond 258 51.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
30679911 30679911 PRJNA596870_P_NODE_22733_length_283_cov_1.200000_g22600_i0 PRJNA596870 22733 283 1.2 3.396 Compostimonas suwonensis 1048394 Bacteria Bacteria 100 1.5999999999999999e-24   NR WP_100343925.1 1048394 g22600 i0 67.5 0.816254416961131 77 25 81.6 0 51 281 7 83 WP_100343925.1 hypothetical protein [Compostimonas suwonensis] diamond 231 100 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Compostimonas Compostimonas suwonensis
30679912 30679912 PRJNA596870_P_NODE_25853_length_267_cov_1.587629_g25720_i0 PRJNA596870 25853 267 1.587629 4.23896943 Lawsonella clevelandensis 1528099 Bacteria Bacteria 190 1.49e-57   NR WP_303678928.1 1528099 g25720 i0 100 1 89 0 100 0 267 1 93 181 WP_303678928.1 esterase/lipase family protein [Lawsonella clevelandensis] diamond 267 190 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
30725046 30725046 PRJNA596870_P_NODE_39394_length_241_cov_1.833333_g39261_i0 PRJNA596870 39394 241 1.833333 4.41833253 Corynebacterium 1716 Bacteria Bacteria 112 8.43e-27   NR WP_344850978.1 1288393 g39261 i0 72.5 1.99170124481328 80 21 99.6 1 2 241 66 144 WP_344850978.1 YPDG domain-containing protein [Corynebacterium pilbarense] diamond 480 112 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pilbarense
31248843 31248843 PRJNA596870_P_NODE_29555_length_251_cov_0.865169_g29422_i0 PRJNA596870 29555 251 0.865169 2.17157419 Millisia brevis 264148 Bacteria Bacteria 47.8 6.68e-4   NR WP_066903500.1 264148 g29422 i0 46.6 1.39840637450199 58 30 69.3 1 223 50 219 275 WP_066903500.1 SDR family oxidoreductase [Millisia brevis] diamond 351 47.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Millisia Millisia brevis
31312094 31312094 PRJNA596870_P_NODE_31275_length_249_cov_0.875000_g31142_i0 PRJNA596870 31275 249 0.875 2.17875 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 44.3 0.011   NR HEY7705461.1 2080302 g31142 i0 46.7 0.542168674698795 45 23 54.2 1 50 184 322 365 HEY7705461.1 acyltransferase [Acidimicrobiia bacterium] diamond 135 44.3 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
31547126 31547126 PRJNA596870_P_NODE_40376_length_241_cov_0.857143_g40243_i0 PRJNA596870 40376 241 0.857143 2.06571463 Pseudonocardia 1847 Bacteria Bacteria 79 2.99e-15   NR MDT7718697.1 2201155 g40243 i0 47.5 8.00414937759336 80 42 99.6 0 241 2 172 251 MDT7718697.1 hypothetical protein [Pseudonocardiales bacterium] diamond 1929 79 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales     Pseudonocardiales bacterium
31881345 31881345 PRJNA596870_P_NODE_25657_length_268_cov_1.369231_g25524_i0 PRJNA596870 25657 268 1.369231 3.66953908 Aurantimicrobium sp. 1930784 Bacteria Bacteria 174 3.16e-48   NR WP_332627474.1 1930784 g25524 i0 88.8 0.996268656716418 89 10 99.6 0 1 267 672 760 WP_332627474.1 hypothetical protein [Aurantimicrobium sp.] diamond 267 174 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Aurantimicrobium Aurantimicrobium sp.
32102922 32102922 PRJNA596870_P_NODE_19218_length_304_cov_1.333333_g19085_i0 PRJNA596870 19218 304 1.333333 4.05333232 Actinomycetota bacterium 2900548 Bacteria Bacteria 42.7 0.0196   NR MDQ2816046.1 2900548 g19085 i0 38.2 0.542763157894737 55 34 54.3 0 53 217 24 78 MDQ2816046.1 DUF2461 domain-containing protein [Actinomycetota bacterium] diamond 165 42.7 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32324796 32324796 PRJNA596870_P_NODE_35819_length_245_cov_0.895349_g35686_i0 PRJNA596870 35819 245 0.895349 2.19360505 Microbacterium sp. 69-7 1895784 Bacteria Bacteria 80.1 2.85e-16   NR WP_288119540.1 1895784 g35686 i0 95.3 0.52653061224489806 43 2 52.7 0 1 129 170 212 WP_288119540.1 2-phosphosulfolactate phosphatase [Microbacterium sp. 69-7] diamond 129 80.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. 69-7
32419446 32419446 PRJNA596870_P_NODE_18239_length_311_cov_1.281513_g18106_i0 PRJNA596870 18239 311 1.281513 3.98550543 Microbacterium hominis 162426 Bacteria Bacteria 82.8 9.64e-17   NR WP_156122581.1 162426 g18106 i0 82.3 1.06109324758842 62 11 59.8 0 125 310 25 86 WP_156122581.1 hypothetical protein [Microbacterium hominis] diamond 330 82.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium hominis
32892282 32892282 PRJNA596870_P_NODE_37340_length_243_cov_2.000000_g37207_i0 PRJNA596870 37340 243 2 4.86 Microbacterium sp. cx-55 2875948 Bacteria Bacteria 72.4 4.95e-13   NR WP_223721113.1 2875948 g37207 i0 46.1 0.938271604938272 76 41 93.8 0 230 3 110 185 WP_223721113.1 hypothetical protein [Microbacterium sp. cx-55] diamond 228 72.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. cx-55

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;