RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA596870" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA596870 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27301152 27301152 PRJNA596870_P_NODE_26223_length_265_cov_1.604167_g26090_i0 PRJNA596870 26223 265 1.604167 4.25104255 Deinococcus xinjiangensis 457454 Bacteria Bacteria 149 1.86e-42   NR WP_353541169.1 457454 g26090 i0 100 0.883018867924528 78 0 88.3 0 3 236 188 265 WP_353541169.1 NINE protein [Deinococcus xinjiangensis] diamond 234 149 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus xinjiangensis
28879784 28879784 PRJNA596870_P_NODE_16708_length_323_cov_0.920000_g16575_i0 PRJNA596870 16708 323 0.92 2.9716 Deinococcus hopiensis 309885 Bacteria Bacteria 166 1.03e-46   NR WP_170928889.1 309885 g16575 i0 73.6 2.95356037151703 106 28 98.5 0 4 321 66 171 WP_170928889.1 glycoside hydrolase family 30 protein [Deinococcus hopiensis] diamond 954 166 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus hopiensis
30111360 30111360 PRJNA596870_P_NODE_21592_length_288_cov_2.651163_g21459_i0 PRJNA596870 21592 288 2.651163 7.63534944 Deinococcus xinjiangensis 457454 Bacteria Bacteria 187 1.78e-58   NR WP_353542765.1 457454 g21459 i0 100 0.989583333333333 95 0 99 0 286 2 56 150 WP_353542765.1 histidine phosphatase family protein [Deinococcus xinjiangensis] diamond 285 187 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus xinjiangensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;