RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA596867" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA596867 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28753532 28753532 PRJNA596867_P_NODE_2487_length_459_cov_1.668394_g2412_i0 PRJNA596867 2487 459 1.668394 7.65792846 Acidobacteriota bacterium 1978231 Bacteria Bacteria 191 1.42e-53   NR MBO08892.1 1978231 g2412 i0 69.9 1.01960784313725 156 44 100 2 459 1 315 470 MBO08892.1 hypothetical protein [Acidobacteriota bacterium] diamond 468 191 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31438571 31438571 PRJNA596867_P_NODE_13896_length_244_cov_0.900585_g13821_i0 PRJNA596867 13896 244 0.900585 2.1974274 Acidobacteriota bacterium 1978231 Bacteria Bacteria 42.4 0.0464   NR MBU4494374.1 1978231 g13821 i0 43.2 0.540983606557377 44 23 51.6 1 146 21 66 109 MBU4494374.1 tetratricopeptide repeat protein [Acidobacteriota bacterium] diamond 132 42.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31881341 31881341 PRJNA596867_P_NODE_8277_length_287_cov_2.443925_g8202_i0 PRJNA596867 8277 287 2.443925 7.01406475 Acidobacteriota bacterium 1978231 Bacteria Bacteria 143 3.18e-37   NR MBO08892.1 1978231 g8202 i0 74.7 0.993031358885017 95 24 99.3 0 2 286 167 261 MBO08892.1 hypothetical protein [Acidobacteriota bacterium] diamond 285 143 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32261453 32261453 PRJNA596867_P_NODE_7518_length_299_cov_1.022124_g7443_i0 PRJNA596867 7518 299 1.022124 3.05615076 Acidobacteriota bacterium 1978231 Bacteria Bacteria 156 8.79e-42   NR MBO08892.1 1978231 g7443 i0 80.8 0.993311036789298 99 19 99.3 0 297 1 29 127 MBO08892.1 hypothetical protein [Acidobacteriota bacterium] diamond 297 156 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;