RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA596867" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA596867 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28879774 28879774 PRJNA596867_P_NODE_12168_length_249_cov_0.875000_g12093_i0 PRJNA596867 12168 249 0.875 2.17875 Planctomycetota bacterium 2026780 Bacteria Bacteria 44.3 0.00823   NR MCH7720669.1 2026780 g12093 i0 39.3 0.674698795180723 56 30 66.3 2 85 249 114 166 MCH7720669.1 hypothetical protein [Planctomycetota bacterium] diamond 168 44.3 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31407162 31407162 PRJNA596867_P_NODE_12336_length_248_cov_1.754286_g12261_i0 PRJNA596867 12336 248 1.754286 4.35062928 Candidatus Brocadiales bacterium 2760054 Bacteria Bacteria 60.5 1.1e-9   NR MBC8548140.1 2760054 g12261 i0 40 0.967741935483871 80 47 96.8 1 242 3 16 94 MBC8548140.1 PAAR domain-containing protein [Candidatus Brocadiales bacterium] diamond 240 60.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales     Candidatus Brocadiales bacterium
32387742 32387742 PRJNA596867_P_NODE_12079_length_249_cov_0.875000_g12004_i0 PRJNA596867 12079 249 0.875 2.17875 Tepidisphaeraceae bacterium 2876886 Bacteria Bacteria 69.3 1.75e-11   NR HEX8341177.1 2876886 g12004 i0 47.5 1.85542168674699 80 42 96.4 0 10 249 393 472 HEX8341177.1 glycosyltransferase family 39 protein [Tepidisphaeraceae bacterium] diamond 462 69.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae   Tepidisphaeraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;