RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA596867" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA596867 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28153877 28153877 PRJNA596867_P_NODE_12105_length_249_cov_0.875000_g12030_i0 PRJNA596867 12105 249 0.875 2.17875 Pseudoprevotella muciniphila 2133944 Bacteria Bacteria 43.9 0.0132   NR WP_111898930.1 2133944 g12030 i0 45.7 0.421686746987952 35 18 42.2 1 38 142 13 46 WP_111898930.1 HAD family hydrolase [Pseudoprevotella muciniphila] diamond 105 43.9 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Pseudoprevotella Pseudoprevotella muciniphila
30914827 30914827 PRJNA596867_P_NODE_11954_length_249_cov_1.982955_g11879_i0 PRJNA596867 11954 249 1.982955 4.93755795 Mucilaginibacter 423349 Bacteria Bacteria 54.3 3.27e-6   NR WP_008510333.1 423351 g11879 i0 92.9 10.4457831325301 28 2 33.7 0 166 249 1 28 WP_008510333.1 DNA topoisomerase IB [Mucilaginibacter paludis] diamond 2601 54.3 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter paludis
32197925 32197925 PRJNA596867_P_NODE_12178_length_249_cov_0.875000_g12103_i0 PRJNA596867 12178 249 0.875 2.17875 Flectobacillus longus 2984207 Bacteria Bacteria 40.8 0.0255   NR WP_283330396.1 2984207 g12103 i0 72 0.301204819277108 25 7 30.1 0 175 101 38 62 WP_283330396.1 hypothetical protein, partial [Flectobacillus longus] diamond 75 40.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Flectobacillaceae Flectobacillus Flectobacillus longus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;