RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA594101" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA594101 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27598871 27598871 PRJNA594101_S_NODE_33884_length_296_cov_2.071749_g33582_i0 PRJNA594101 33884 296 2.071749 6.13237704 Bacteria 2 Bacteria Bacteria 60.5 3.99e-8   NR WP_098077455.1 1850348 g33582 i0 71.7 6.98310810810811 46 11 44.6 2 154 285 49 94 WP_098077455.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB [Longibacter salinarum] diamond 2067 60.8 0.995065789473684 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Longibacter Longibacter salinarum
29903730 29903730 PRJNA594101_S_NODE_35091_length_292_cov_1.369863_g34789_i0 PRJNA594101 35091 292 1.369863 3.99999996 Bacteria 2 Bacteria Bacteria 60.5 3.71e-8   NR WP_098077455.1 1850348 g34789 i0 71.7 5.41438356164384 46 11 45.2 2 173 42 49 94 WP_098077455.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB [Longibacter salinarum] diamond 1581 60.8 0.995065789473684 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Longibacter Longibacter salinarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;