RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA591127" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA591127 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24791248 24791248 PRJNA591127_P_NODE_22920_length_181_cov_7.902778_g22751_i0 PRJNA591127 22920 181 7.902778 14.30402818 Opisthokonta 33154 Nematoda Nematoda 102 5.19e-25   NR NP_507940.1 6239 g22751 i0 76.7 11.8839779005525 60 14 99.4 0 180 1 14 73 NP_507940.1 Large ribosomal subunit protein uL2 [Caenorhabditis elegans] diamond 2151 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
28135545 28135545 PRJNA591127_P_NODE_12025_length_212_cov_3.685714_g11856_i0 PRJNA591127 12025 212 3.685714 7.81371368 Nematoda 6231 Nematoda Nematoda 82 1.44e-16   NR XP_024509313.1 34506 g11856 i0 55.9 2.90094339622642 68 30 96.2 0 8 211 16 83 XP_024509313.1 60S acidic ribosomal protein P0 [Strongyloides ratti] diamond 615 82.8 0.990338164251208 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
31059474 31059474 PRJNA591127_P_NODE_13175_length_202_cov_5.127273_g13006_i0 PRJNA591127 13175 202 5.127273 10.35709146 Caenorhabditis remanei 31234 Nematoda Nematoda 43.1 0.0157   NR XP_003107396.2 31234 g13006 i0 75 0.698019801980198 24 6 35.6 0 74 3 507 530 XP_003107396.2 hypothetical protein GCK72_003543 [Caenorhabditis remanei] diamond 141 43.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;