RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA591127" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA591127 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26763174 26763174 PRJNA591127_P_NODE_17421_length_197_cov_2.493750_g17252_i0 PRJNA591127 17421 197 2.49375 4.9126875 Natronosalvus halobius 2953746 Archaea Archaea 75.1 7.96e-14   NR WP_253437457.1 2953746 g17252 i0 71 0.944162436548223 62 9 94.4 1 10 195 458 510 WP_253437457.1 DEAD/DEAH box helicase family protein [Natronosalvus halobius] diamond 186 75.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronosalvus Natronosalvus halobius
31786295 31786295 PRJNA591127_P_NODE_20657_length_196_cov_3.069182_g20488_i0 PRJNA591127 20657 196 3.069182 6.01559672 Methanobacterium sp. 2164 Archaea Archaea 45.1 0.00266   NR MDD1775483.1 2164 g20488 i0 76 0.75 25 6 38.3 0 75 1 79 103 MDD1775483.1 CPBP family intramembrane metalloprotease [Methanobacterium sp.] diamond 147 45.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
31831376 31831376 PRJNA591127_P_NODE_14237_length_197_cov_4.643750_g14068_i0 PRJNA591127 14237 197 4.64375 9.1481875 Halalkalicoccus 332246 Archaea Archaea 58.9 3.7e-8   NR WP_066383698.1 1008153 g14068 i0 92 1.52284263959391 25 2 38.1 0 2 76 125 149 WP_066383698.1 DUF354 domain-containing protein [Halalkalicoccus paucihalophilus] diamond 300 58.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus paucihalophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;