RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA591127" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA591127 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12617916 12617916 PRJNA591127_P_NODE_28230_length_153_cov_1.008621_g28061_i0 PRJNA591127 28230 153 1.008621 1.54319013 Aves 8782 Chordata Chordata 63.5 3.05e-10   NR XP_009995761.1 8897 g28061 i0 62 18.6274509803922 50 18 98 1 3 152 150 198 XP_009995761.1 PREDICTED: dnaJ homolog subfamily A member 2 [Chaetura pelagica] diamond 2850 63.9 0.993740219092332 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Apodidae Chaetura Chaetura pelagica
23517483 23517483 PRJNA591127_P_NODE_28239_length_153_cov_0.991379_g28070_i0 PRJNA591127 28239 153 0.991379 1.51680987 Rousettus aegyptiacus 9407 Chordata Chordata 67 9.22e-12   NR KAF6485409.1 9407 g28070 i0 85.3 11.4509803921569 34 5 66.7 0 44 145 111 144 KAF6485409.1 hypothetical protein HJG63_010624 [Rousettus aegyptiacus] diamond 1752 67.4 0.99406528189911 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
26903471 26903471 PRJNA591127_P_NODE_19941_length_197_cov_1.875000_g19772_i0 PRJNA591127 19941 197 1.875 3.69375 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 45.4 7.02e-4   NR XP_058515686.1 9978 g19772 i0 76 3.80710659898477 25 6 38.1 0 75 1 37 61 XP_058515686.1 small ribosomal subunit protein uS10-like [Ochotona princeps] diamond 750 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Ochotonidae Ochotona Ochotona princeps
28027350 28027350 PRJNA591127_P_NODE_19845_length_197_cov_1.900000_g19676_i0 PRJNA591127 19845 197 1.9 3.743 Balaenoptera physalus 9770 Chordata Chordata 42.7 0.0209   NR KAB0402783.1 9770 g19676 i0 76 0.380710659898477 25 6 38.1 0 122 196 1638 1662 KAB0402783.1 hypothetical protein E2I00_005145, partial [Balaenoptera physalus] diamond 75 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera physalus
29763642 29763642 PRJNA591127_P_NODE_25911_length_163_cov_5.865079_g25742_i0 PRJNA591127 25911 163 5.865079 9.56007877 Ovis aries 9940 Chordata Chordata 41.6 0.0333   NR KAG5195653.1 9940 g25742 i0 65.4 0.478527607361963 26 9 47.9 0 25 102 74 99 KAG5195653.1 hypothetical protein JEQ12_011948 [Ovis aries] diamond 78 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
31185260 31185260 PRJNA591127_P_NODE_23215_length_179_cov_7.978873_g23046_i0 PRJNA591127 23215 179 7.978873 14.28218267 Bufotes viridis 30338 Chordata Chordata 47 5.02e-4   NR CAK8609802.1 30338 g23046 i0 55.9 1.13966480446927 34 15 57 0 76 177 1 34 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 204 47 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;