RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA591127" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA591127 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26966553 26966553 PRJNA591127_P_NODE_31702_length_150_cov_3.477876_g31533_i0 PRJNA591127 31702 150 3.477876 5.216814 Bacteria 2 Bacteria Bacteria 48.1 1.33e-4   NR MDY0194001.1 28197 g31533 i0 65.5 1.86 29 10 58 0 1 87 299 327 MDY0194001.1 hypothetical protein [Aliarcobacter butzleri] diamond 279 48.5 0.991752577319588 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri
27079694 27079694 PRJNA591127_P_NODE_15202_length_197_cov_3.456250_g15033_i0 PRJNA591127 15202 197 3.45625 6.8088125 Campylobacter jejuni 197 Bacteria Bacteria 50.4 1.19e-5   NR MBT0611151.1 197 g15033 i0 100 0.365482233502538 24 0 36.5 0 3 74 64 87 MBT0611151.1 hypothetical protein [Campylobacter jejuni] diamond 72 50.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
27332742 27332742 PRJNA591127_P_NODE_28783_length_151_cov_5.596491_g28614_i0 PRJNA591127 28783 151 5.596491 8.45070141 Aliarcobacter sp. 2321116 Bacteria Bacteria 86.3 4.31e-18   NR MDY0052110.1 2321116 g28614 i0 73.8 1.21192052980132 61 5 99.3 1 1 150 33 93 MDY0052110.1 hypothetical protein [Aliarcobacter sp.] diamond 183 86.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter sp.
27869229 27869229 PRJNA591127_P_NODE_9905_length_234_cov_1.802030_g9737_i0 PRJNA591127 9905 234 1.80203 4.2167502 Sulfurospirillum sp. 2053622 Bacteria Bacteria 65.1 7.4e-11   NR MBE0490916.1 2053622 g9737 i0 41.8 1.01282051282051 79 44 98.7 2 231 1 34 112 MBE0490916.1 lipocalin family protein [Sulfurospirillum sp.] diamond 237 65.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp.
28027346 28027346 PRJNA591127_P_NODE_10025_length_232_cov_3.994872_g9857_i0 PRJNA591127 10025 232 3.994872 9.26810304 Helicobacter pylori 210 Bacteria Bacteria 52.4 7.65e-7   NR GAA9176533.1 210 g9857 i0 55.4 0.724137931034483 56 24 72.4 1 228 61 1 55 GAA9176533.1 hypothetical protein Kyoto193A_0850 [Helicobacter pylori] diamond 168 52.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29921886 29921886 PRJNA591127_P_NODE_31211_length_150_cov_5.805310_g31042_i0 PRJNA591127 31211 150 5.80531 8.707965 Campylobacter sp. 205 Bacteria Bacteria 75.1 3.91e-14   NR MDY4860183.1 205 g31042 i0 60 14.2 65 10 98 1 148 2 32 96 MDY4860183.1 ABC transporter permease [Campylobacter sp.] diamond 2130 75.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp.
30237678 30237678 PRJNA591127_P_NODE_13552_length_199_cov_12.308642_g13383_i0 PRJNA591127 13552 199 12.308642 24.49419758 Helicobacter pylori 210 Bacteria Bacteria 65.5 3.05e-12   NR GAA9131729.1 210 g13383 i0 82.4 1.40201005025126 34 6 51.3 0 197 96 2 35 GAA9131729.1 hypothetical protein Kyoto190A_2250 [Helicobacter pylori] diamond 279 65.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;