RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA591127" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA591127 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29271866 29271866 PRJNA591127_P_NODE_24809_length_169_cov_4.863636_g24640_i0 PRJNA591127 24809 169 4.863636 8.21954484 Eukaryota 2759 Plants Plants 65.1 3.76e-11   NR KAI8114419.1 2696299 g24640 i0 75.7 4.63313609467456 37 9 65.7 0 167 57 151 187 KAI8114419.1 hypothetical protein M9434_002543 [Picochlorum sp. BPE23] diamond 783 65.5 0.993893129770992 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23
30092954 30092954 PRJNA591127_P_NODE_12572_length_207_cov_4.417647_g12403_i0 PRJNA591127 12572 207 4.417647 9.14452929 Eukaryota 2759 Plants Plants 80.1 2.43e-16   NR CAL5222236.1 1274662 g12403 i0 70.5 12.3478260869565 61 17 88.4 1 25 207 62 121 CAL5222236.1 g4570 [Coccomyxa viridis] diamond 2556 80.5 0.995031055900621 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
30472413 30472413 PRJNA591127_P_NODE_27193_length_157_cov_4.041667_g27024_i0 PRJNA591127 27193 157 4.041667 6.34541719 Eukaryota 2759 Plants Plants 82.4 6.2e-17   NR CAA87751.1 3161 g27024 i0 74 34.9299363057325 50 13 95.5 0 3 152 7 56 CAA87751.1 Apocytochrome b [Tetraselmis subcordiformis] diamond 5484 82.8 0.995169082125604 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis subcordiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;