RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA591127" and tax_clade = "Metamonada"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA591127 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27995782 27995782 PRJNA591127_P_NODE_8885_length_247_cov_1.114286_g8717_i0 PRJNA591127 8885 247 1.114286 2.75228642 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 92 3.71e-21   NR XP_001301101.1 412133 g8717 i0 59.3 1.96761133603239 81 33 98.4 0 245 3 58 138 XP_001301101.1 ribosomal protein family [Trichomonas vaginalis G3] diamond 486 92 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30837975 30837975 PRJNA591127_P_NODE_24834_length_169_cov_3.522727_g24665_i0 PRJNA591127 24834 169 3.522727 5.95340863 Giardia muris 5742 Fornicata other_Eukaryota 57.4 5.94e-9   NR TNJ30202.1 5742 g24665 i0 53.3 0.798816568047337 45 21 79.9 0 135 1 6 50 TNJ30202.1 Ribosomal protein S21 [Giardia muris] diamond 135 57.4 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris
32748281 32748281 PRJNA591127_P_NODE_28200_length_153_cov_1.344828_g28031_i0 PRJNA591127 28200 153 1.344828 2.05758684 Giardia 5740 Fornicata other_Eukaryota 52.8 3.08e-6   NR ESU42061.1 5741 g28031 i0 57.1 11.5294117647059 49 17 96.1 1 149 3 66 110 ESU42061.1 Protein kinase, catalytic domain [Giardia intestinalis] diamond 1764 52.8 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;