RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA591000" and tax_phylum = "Candidatus Berkelbacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Berkelbacteria · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA591000 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26604638 26604638 PRJNA591000_P_NODE_8461_length_478_cov_1.808463_g6940_i0 PRJNA591000 8461 478 1.808463 8.64445314 Candidatus Berkelbacteria bacterium 2053521 Bacteria Bacteria 78.6 1.41e-13   NR MCR4308382.1 2053521 g6940 i0 68.3 0.395397489539749 63 19 38.9 1 9 194 243 305 MCR4308382.1 phage major capsid protein [Candidatus Berkelbacteria bacterium] diamond 189 78.6 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium
29511072 29511072 PRJNA591000_P_NODE_1270_length_1055_cov_8.028265_g892_i0 PRJNA591000 1270 1055 8.028265 84.69819575 Candidatus Berkelbacteria bacterium 2053521 Bacteria Bacteria 156 5.05e-38   NR MCX6809480.1 2053521 g892 i0 38.1 0.799052132701422 281 157 78.5 7 1036 209 299 567 MCX6809480.1 S8 family serine peptidase [Candidatus Berkelbacteria bacterium] diamond 843 156 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;