RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA591000" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA591000 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32039617 32039617 PRJNA591000_P_NODE_3918_length_729_cov_2.792857_g3074_i0 PRJNA591000 3918 729 2.792857 20.35992753 SAR324 cluster bacterium 2024889 Bacteria Bacteria 91.3 4.69e-17   NR NMC63351.1 2024889 g3074 i0 36.4 1.11111111111111 140 87 56.8 1 259 672 310 449 NMC63351.1 M23 family metallopeptidase [SAR324 cluster bacterium] diamond 810 91.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
32261355 32261355 PRJNA591000_P_NODE_1738_length_951_cov_1.668113_g1258_i0 PRJNA591000 1738 951 1.668113 15.86375463 Deltaproteobacteria bacterium ADurb.Bin135 1852867 Bacteria Bacteria 101 8.9e-20   NR OQB75650.1 1852867 g1258 i0 30.7 1.25552050473186 199 56 62.8 1 597 1 240 356 OQB75650.1 MAG: hypothetical protein BWX92_02525 [Deltaproteobacteria bacterium ADurb.Bin135] diamond 1194 101 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium ADurb.Bin135

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;