RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA588137" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA588137 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29290137 29290137 PRJNA588137_S_NODE_9509_length_244_cov_0.900585_g9476_i0 PRJNA588137 9509 244 0.900585 2.1974274 Oikopleura dioica 34765 Chordata Chordata 44.3 0.0103   NR CAG5114304.1 34765 g9476 i0 34.4 4.81967213114754 64 42 78.7 0 2 193 148 211 CAG5114304.1 Oidioi.mRNA.OKI2018_I69.chr2.g8364.t1.cds [Oikopleura dioica] diamond 1176 44.7 0.991051454138702 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
32779623 32779623 PRJNA588137_S_NODE_8460_length_246_cov_1.780347_g8427_i0 PRJNA588137 8460 246 1.780347 4.37965362 Metazoa 33208 Chordata Chordata 47.8 6.79e-4   NR XP_045011491.1 51337 g8427 i0 45.7 3.48780487804878 46 25 56.1 0 228 91 344 389 XP_045011491.1 leishmanolysin-like peptidase 2 [Jaculus jaculus] diamond 858 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Dipodidae Jaculus Jaculus jaculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;