RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA588137" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA588137 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28609054 28609054 PRJNA588137_S_NODE_9887_length_243_cov_1.200000_g9854_i0 PRJNA588137 9887 243 1.2 2.916 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 98.2 8.98e-25   NR XP_001349810.1 36329 g9854 i0 63.6 10.5061728395062 66 24 81.5 0 222 25 15 80 XP_001349810.1 40S ribosomal protein S27 [Plasmodium falciparum 3D7] diamond 2553 99 0.991919191919192 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
29037838 29037838 PRJNA588137_S_NODE_2868_length_325_cov_1.797619_g2835_i0 PRJNA588137 2868 325 1.797619 5.84226175 Plasmodium falciparum IGH-CR14 580059 SAR_Eukaryotes SAR_Eukaryotes 75.1 8.75e-15   NR KNG74704.1 580059 g2835 i0 100 0.341538461538462 37 0 34.2 0 257 147 1 37 KNG74704.1 hypothetical protein PFMG_00859 [Plasmodium falciparum IGH-CR14] diamond 111 75.1 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;