RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA577580" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA577580 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28500909 28500909 PRJNA577580_P_NODE_1127_length_843_cov_1.781818_g1061_i0 PRJNA577580 1127 843 1.781818 15.02072574 Chthonomonadales bacterium 2282151 Bacteria Bacteria 105 2.5200000000000004e-21   NR NLH98444.1 2282151 g1061 i0 34.3 0.829181494661922 233 135 79.4 9 97 765 124 348 NLH98444.1 cadherin-like domain-containing protein [Chthonomonadales bacterium] diamond 699 105 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales     Chthonomonadales bacterium
29953297 29953297 PRJNA577580_P_NODE_1351_length_779_cov_3.753541_g1282_i0 PRJNA577580 1351 779 3.753541 29.24008439 Chthonomonadales bacterium 2282151 Bacteria Bacteria 148 1.75e-38   NR NLI01589.1 2282151 g1282 i0 36.1 2.85750962772786 252 160 96.7 1 1 753 93 344 NLI01589.1 cell wall anchor protein [Chthonomonadales bacterium] diamond 2226 148 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales     Chthonomonadales bacterium
31912968 31912968 PRJNA577580_P_NODE_1297_length_791_cov_2.898329_g1228_i0 PRJNA577580 1297 791 2.898329 22.92578239 Armatimonadota bacterium 2033014 Bacteria Bacteria 189 2.41e-51   NR MBV9850127.1 2033014 g1228 i0 39.3 0.993678887484197 262 142 99 6 3 785 478 723 MBV9850127.1 hypothetical protein [Armatimonadota bacterium] diamond 786 189 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;