RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA577226" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA577226 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27364433 27364433 PRJNA577226_S_NODE_65323_length_156_cov_1.638655_g64384_i0 PRJNA577226 65323 156 1.638655 2.5563018 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 72.8 1.39e-13   NR CAF0792993.1 104777 g64384 i0 82.9 0.788461538461538 41 7 78.8 0 1 123 241 281 CAF0792993.1 unnamed protein product [Brachionus calyciflorus] diamond 123 72.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
27756770 27756770 PRJNA577226_S_NODE_33324_length_216_cov_1.525140_g32385_i0 PRJNA577226 33324 216 1.52514 3.2943024 Rotaria 231623 Rotifera other_Eukaryota 48.9 1.76e-4   NR CAF4011093.1 392030 g32385 i0 36.5 5.05555555555556 52 33 72.2 0 212 57 1074 1125 CAF4011093.1 unnamed protein product, partial [Rotaria magnacalcarata] diamond 1092 49.3 0.991886409736308 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria magnacalcarata
29303612 29303612 PRJNA577226_S_NODE_67069_length_154_cov_2.333333_g66130_i0 PRJNA577226 67069 154 2.333333 3.59333282 Metazoa 33208 Rotifera other_Eukaryota 47.4 2.61e-4   NR YP_001739865.1 10195 g66130 i0 45.2 1.77272727272727 42 23 81.8 0 1 126 473 514 YP_001739865.1 cytochrome c oxidase subunit I [Brachionus plicatilis] diamond 273 47.8 0.99163179916318 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
31501940 31501940 PRJNA577226_S_NODE_71476_length_150_cov_2.070796_g70537_i0 PRJNA577226 71476 150 2.070796 3.106194 Brachionus angularis 396692 Rotifera other_Eukaryota 41.6 0.0102   NR QST18670.1 396692 g70537 i0 80 0.5 25 5 50 0 75 149 18 42 QST18670.1 NADH dehydrogenase subunit 3 [Brachionus angularis] diamond 75 41.6 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus angularis
32274726 32274726 PRJNA577226_S_NODE_47938_length_180_cov_1.636364_g46999_i0 PRJNA577226 47938 180 1.636364 2.9454552 Metazoa 33208 Rotifera other_Eukaryota 61.6 3.29e-9   NR QKV49097.1 360698 g46999 i0 61.4 1.43333333333333 44 17 73.3 0 179 48 321 364 QKV49097.1 cytochrome b [Proales similis] diamond 258 62 0.993548387096774 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Proales Proales similis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;