RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA577226" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA577226 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27427487 27427487 PRJNA577226_S_NODE_35103_length_210_cov_2.028902_g34164_i0 PRJNA577226 35103 210 2.028902 4.2606942 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 102 1.37e-26   NR AAX30341.2 6182 g34164 i0 80.3 0.942857142857143 66 10 91.4 2 194 3 4 68 AAX30341.2 SJCHGC03035 protein [Schistosoma japonicum] diamond 198 102 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
29321652 29321652 PRJNA577226_S_NODE_70769_length_151_cov_1.368421_g69830_i0 PRJNA577226 70769 151 1.368421 2.06631571 Cichlidogyrus casuarinus 1844966 Platyhelminthes Platyhelminthes 82.4 3.32e-18   NR KAL3311549.1 1844966 g69830 i0 73.5 12.6556291390728 49 13 97.4 0 3 149 14 62 KAL3311549.1 GTP-binding protein Rho1 [Cichlidogyrus casuarinus] diamond 1911 82.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Dactylogyridea Ancyrocephalidae Cichlidogyrus Cichlidogyrus casuarinus
31723057 31723057 PRJNA577226_S_NODE_50497_length_176_cov_1.064748_g49558_i0 PRJNA577226 50497 176 1.064748 1.87395648 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 80.1 1.46e-17   NR AAX24812.2 6182 g49558 i0 69.4 1.63636363636364 49 15 83.5 0 3 149 8 56 AAX24812.2 SJCHGC04011 protein, partial [Schistosoma japonicum] diamond 288 80.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;