RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA577226" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA577226 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28469383 28469383 PRJNA577226_S_NODE_42066_length_192_cov_1.258065_g41127_i0 PRJNA577226 42066 192 1.258065 2.4154848 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 50.8 6.05e-6   NR HLQ22961.1 2448054 g41127 i0 51 3.21875 51 25 79.7 0 30 182 24 74 HLQ22961.1 His/Gly/Thr/Pro-type tRNA ligase C-terminal domain-containing protein [Gemmatimonadales bacterium] diamond 618 50.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30774861 30774861 PRJNA577226_S_NODE_31434_length_223_cov_1.258065_g30495_i0 PRJNA577226 31434 223 1.258065 2.80548495 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 79 6.03e-17   NR HXG70346.1 2026741 g30495 i0 74.1 0.726457399103139 54 13 71.3 1 159 1 2 55 HXG70346.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 162 79 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31723053 31723053 PRJNA577226_S_NODE_4477_length_680_cov_2.734059_g3599_i0 PRJNA577226 4477 680 2.734059 18.5916012 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 47 0.0362   NR MEP6688940.1 2448054 g3599 i0 39.4 0.313235294117647 71 43 31.3 0 71 283 37 107 MEP6688940.1 argininosuccinate synthase domain-containing protein [Gemmatimonadales bacterium] diamond 213 47 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;