RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA577226" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA577226 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27300948 27300948 PRJNA577226_S_NODE_23463_length_260_cov_1.573991_g22524_i0 PRJNA577226 23463 260 1.573991 4.0923766 Chlamydia trachomatis 813 Bacteria Bacteria 166 1.26e-50   NR WP_194941313.1 813 g22524 i0 100 0.923076923076923 80 0 92.3 0 1 240 75 154 WP_194941313.1 hypothetical protein [Chlamydia trachomatis] diamond 240 166 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
27395890 27395890 PRJNA577226_S_NODE_48943_length_178_cov_1.957447_g48004_i0 PRJNA577226 48943 178 1.957447 3.48425566 Chlamydia trachomatis 813 Bacteria Bacteria 114 1.1000000000000002e-28   NR CPR46792.1 813 g48004 i0 100 0.97752808988764 58 0 97.8 0 176 3 281 338 CPR46792.1 Uncharacterised protein [Chlamydia trachomatis] diamond 174 114 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
31533584 31533584 PRJNA577226_S_NODE_41296_length_193_cov_2.500000_g40357_i0 PRJNA577226 41296 193 2.5 4.825 Chlamydia trachomatis 813 Bacteria Bacteria 108 2.25e-26   NR CPR46792.1 813 g40357 i0 100 0.994818652849741 64 0 99.5 0 193 2 76 139 CPR46792.1 Uncharacterised protein [Chlamydia trachomatis] diamond 192 108 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;