RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA577226" and tax_kingdom = "Viridiplantae"

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tax_phylum 2

tax_clade 2

tax_superkingdom 1

tax_kingdom 1

  • Viridiplantae · 4 ✖

bioproject 1

  • PRJNA577226 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28595689 28595689 PRJNA577226_S_NODE_56147_length_167_cov_1.500000_g55208_i0 PRJNA577226 56147 167 1.5 2.505 Micractinium sp. CCAP 211/92 554058 Plants Plants 41.6 0.0348   NR KAL4447325.1 554058 g55208 i0 54.8 0.754491017964072 42 13 70.1 2 18 134 110 148 KAL4447325.1 hypothetical protein ABPG77_007358 [Micractinium sp. CCAP 211/92] diamond 126 41.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium sp. CCAP 211/92
30396004 30396004 PRJNA577226_S_NODE_5313_length_607_cov_2.629825_g4410_i0 PRJNA577226 5313 607 2.629825 15.96303775 Tanacetum cinerariifolium 118510 Plants Plants 43.9 0.0322   NR GFD57314.1 118510 g4410 i0 50.8 0.301482701812191 61 25 28.2 2 265 435 10 69 GFD57314.1 hypothetical protein [Tanacetum cinerariifolium] diamond 183 43.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Tanacetum Tanacetum cinerariifolium
30409442 30409442 PRJNA577226_S_NODE_33713_length_214_cov_8.265537_g32774_i0 PRJNA577226 33713 214 8.265537 17.68824918 Opisthokonta 33154 Plants Plants 107 5.279999999999999e-28   NR KAK3258497.1 36881 g32774 i0 79.7 4.61214953271028 69 14 96.7 0 8 214 38 106 KAK3258497.1 receptor of activated protein kinase C 1-like protein [Cymbomonas tetramitiformis] diamond 987 107 1 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Cymbomonas Cymbomonas tetramitiformis
31153511 31153511 PRJNA577226_S_NODE_60495_length_161_cov_2.838710_g59556_i0 PRJNA577226 60495 161 2.83871 4.5703231 Morella rubra 262757 Plants Plants 70.1 1.03e-12   NR KAB1201195.1 262757 g59556 i0 94.1 0.633540372670807 34 2 63.4 0 156 55 41 74 KAB1201195.1 hypothetical protein CJ030_MR0G004676 [Morella rubra] diamond 102 70.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Myricaceae Morella Morella rubra

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;