RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA577226" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA577226 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27711903 27711903 PRJNA577226_S_NODE_9984_length_417_cov_2.323684_g9048_i0 PRJNA577226 9984 417 2.323684 9.68976228 Fusobacterium necrophorum 859 Bacteria Bacteria 45.1 0.0376   NR WP_261791110.1 859 g9048 i0 26.5 0.841726618705036 117 69 71.9 3 323 24 369 485 WP_261791110.1 YadA-like family protein [Fusobacterium necrophorum] diamond 351 45.1 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
30346427 30346427 PRJNA577226_S_NODE_47732_length_180_cov_2.881119_g46793_i0 PRJNA577226 47732 180 2.881119 5.1860142 root 1 Root_unresolved Root_unresolved 65.9 1.11e-10   NR WP_021746646.1 157687 g46793 i0 49.2 2.83333333333333 59 29 96.7 1 176 3 668 726 WP_021746646.1 ribonucleotide reductase N-terminal alpha domain-containing protein [Leptotrichia wadei] diamond 510 65.9 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
30630105 30630105 PRJNA577226_S_NODE_58273_length_164_cov_1.748031_g57334_i0 PRJNA577226 58273 164 1.748031 2.86677084 FCB group 1783270 Bacteria Bacteria 54.7 7.75e-7   NR WP_021746646.1 157687 g57334 i0 47.2 2.8719512195122 53 28 97 0 5 163 612 664 WP_021746646.1 ribonucleotide reductase N-terminal alpha domain-containing protein [Leptotrichia wadei] diamond 471 55.1 0.992740471869329 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;