RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA577226" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA577226 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28342913 28342913 PRJNA577226_S_NODE_3986_length_737_cov_3.170000_g3126_i0 PRJNA577226 3986 737 3.17 23.3629 Besnoitia besnoiti 94643 SAR_Eukaryotes SAR_Eukaryotes 47.8 0.0321   NR XP_029220138.1 94643 g3126 i0 33.9 0.492537313432836 121 69 48.8 2 275 634 559 669 XP_029220138.1 ankyrin repeat-containing protein [Besnoitia besnoiti] diamond 363 47.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
32842598 32842598 PRJNA577226_S_NODE_7220_length_503_cov_3.098712_g6290_i0 PRJNA577226 7220 503 3.098712 15.58652136 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 137 4.92e-35   NR P25166.1 5949 g6290 i0 58.2 10.1153081510934 122 42 72.8 3 503 138 324 436 P25166.1 RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Stylonychia lemnae] diamond 5088 137 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;