RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA577226" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 2 ✖

bioproject 1

  • PRJNA577226 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30396004 30396004 PRJNA577226_S_NODE_5313_length_607_cov_2.629825_g4410_i0 PRJNA577226 5313 607 2.629825 15.96303775 Tanacetum cinerariifolium 118510 Plants Plants 43.9 0.0322   NR GFD57314.1 118510 g4410 i0 50.8 0.301482701812191 61 25 28.2 2 265 435 10 69 GFD57314.1 hypothetical protein [Tanacetum cinerariifolium] diamond 183 43.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Tanacetum Tanacetum cinerariifolium
31153511 31153511 PRJNA577226_S_NODE_60495_length_161_cov_2.838710_g59556_i0 PRJNA577226 60495 161 2.83871 4.5703231 Morella rubra 262757 Plants Plants 70.1 1.03e-12   NR KAB1201195.1 262757 g59556 i0 94.1 0.633540372670807 34 2 63.4 0 156 55 41 74 KAB1201195.1 hypothetical protein CJ030_MR0G004676 [Morella rubra] diamond 102 70.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Myricaceae Morella Morella rubra

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;