RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA576995" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA576995 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28595649 28595649 PRJNA576995_P_NODE_34227_length_253_cov_1.694444_g33635_i0 PRJNA576995 34227 253 1.694444 4.28694332 Kipferlia bialata 797122 Fornicata other_Eukaryota 42.7 0.043   NR GIQ86481.1 797122 g33635 i0 46.2 0.462450592885375 39 21 46.2 0 2 118 160 198 GIQ86481.1 hypothetical protein KIPB_008345, partial [Kipferlia bialata] diamond 117 42.7 1 Eukaryota Metamonada   Fornicata       Kipferlia Kipferlia bialata
29195512 29195512 PRJNA576995_P_NODE_33169_length_260_cov_1.315508_g32577_i0 PRJNA576995 33169 260 1.315508 3.4203208 Aduncisulcus paluster 2918883 Fornicata other_Eukaryota 77.8 2.98e-15   NR GKT28404.1 2918883 g32577 i0 56.5 0.796153846153846 69 28 78.5 2 221 18 17 84 GKT28404.1 Glycoside hydrolase, family 25 like protein [Aduncisulcus paluster] diamond 207 77.8 1 Eukaryota Metamonada   Fornicata       Aduncisulcus Aduncisulcus paluster
31248616 31248616 PRJNA576995_P_NODE_37675_length_248_cov_0.880000_g37083_i0 PRJNA576995 37675 248 0.88 2.1824 Aduncisulcus paluster 2918883 Fornicata other_Eukaryota 54.7 1.58e-6   NR GKT35872.1 2918883 g37083 i0 66.7 2.28629032258065 39 13 47.2 0 122 6 1 39 GKT35872.1 Proteasome subunit alpha type-2-A [Aduncisulcus paluster] diamond 567 54.7 1 Eukaryota Metamonada   Fornicata       Aduncisulcus Aduncisulcus paluster

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;