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contig_metadata

24 rows where analysis = "diamond", bioproject = "PRJNA576995" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA576995 · 24 ✖

analysis 1

  • diamond · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10065496 10065496 PRJNA576995_P_NODE_31628_length_269_cov_1.826531_g31036_i0 PRJNA576995 31628 269 1.826531 4.91336839 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 107 2.61e-27   NR CBY09363.1 34765 g31036 i0 56.7 4.92936802973978 90 35 97 2 264 4 41 129 CBY09363.1 unnamed protein product [Oikopleura dioica] diamond 1326 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
15165079 15165079 PRJNA576995_P_NODE_30032_length_278_cov_1.151220_g29440_i0 PRJNA576995 30032 278 1.15122 3.2003916 Branchiostoma 7737 Chordata Chordata 60.8 2.2e-8   NR XP_035677521.1 7739 g29440 i0 44.8 3.26978417266187 58 24 56.1 2 278 123 305 360 XP_035677521.1 early endosome antigen 1-like [Branchiostoma floridae] diamond 909 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
17138488 17138488 PRJNA576995_P_NODE_41474_length_243_cov_0.905882_g40882_i0 PRJNA576995 41474 243 0.905882 2.20129326 Branchiostoma lanceolatum 7740 Chordata Chordata 147 1.6999999999999996e-43   NR CAH1239908.1 7740 g40882 i0 78.8 9.8765432098765409 80 17 98.8 0 242 3 12 91 CAH1239908.1 EIF5A [Branchiostoma lanceolatum] diamond 2400 147 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
19687186 19687186 PRJNA576995_P_NODE_27856_length_289_cov_1.421296_g27264_i0 PRJNA576995 27856 289 1.421296 4.10754544 root 1 Root_unresolved Root_unresolved 101 1.27e-22   NR XP_004639995.1 10160 g27264 i0 53.8 18.5190311418685 93 42 96.5 1 281 3 308 399 XP_004639995.1 sodium/potassium-transporting ATPase subunit alpha-4 [Octodon degus] diamond 5352 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Octodontidae Octodon Octodon degus
20962998 20962998 PRJNA576995_P_NODE_36777_length_249_cov_0.875000_g36185_i0 PRJNA576995 36777 249 0.875 2.17875 Pelobates 61615 Chordata Chordata 134 2.48e-34   NR CAH2272901.1 61616 g36185 i0 72.8 2.93975903614458 81 22 97.6 0 248 6 163 243 CAH2272901.1 lysosomal alpha-mannosidase [Pelobates cultripes] diamond 732 134 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Pelobates Pelobates cultripes
26984604 26984604 PRJNA576995_P_NODE_42462_length_242_cov_0.911243_g41870_i0 PRJNA576995 42462 242 0.911243 2.20520806 Ciona intestinalis 7719 Chordata Chordata 45.8 0.00303   NR XP_009861388.1 7719 g41870 i0 50 0.570247933884298 46 19 52.1 1 158 33 140 185 XP_009861388.1 E3 ubiquitin-protein ligase NEDD4-like [Ciona intestinalis] diamond 138 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
27155975 27155975 PRJNA576995_P_NODE_30202_length_277_cov_1.230392_g29610_i0 PRJNA576995 30202 277 1.230392 3.40818584 Opisthokonta 33154 Chordata Chordata 47 0.00105   NR XP_002121210.1 7719 g29610 i0 51.6 2.16606498194946 62 26 67.1 2 87 272 18 75 XP_002121210.1 histone H1.0 [Ciona intestinalis] diamond 600 47 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
27205731 27205731 PRJNA576995_P_NODE_14322_length_397_cov_0.929012_g13730_i0 PRJNA576995 14322 397 0.929012 3.68817764 Pseudophryne corroboree 495146 Chordata Chordata 113 4.68e-28   NR XP_063786147.1 495146 g13730 i0 51.9 0.801007556675063 106 49 78.6 1 321 10 44 149 XP_063786147.1 poly(3-hydroxybutyrate) depolymerase-like [Pseudophryne corroboree] diamond 318 113 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Myobatrachidae Pseudophryne Pseudophryne corroboree
27332627 27332627 PRJNA576995_P_NODE_28443_length_286_cov_1.446009_g27851_i0 PRJNA576995 28443 286 1.446009 4.13558574 Erpetoichthys calabaricus 27687 Chordata Chordata 60.1 4.25e-8   NR XP_028678815.1 27687 g27851 i0 38.6 1.81468531468531 88 50 92.3 1 273 10 1 84 XP_028678815.1 pro-cathepsin H [Erpetoichthys calabaricus] diamond 519 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
27932425 27932425 PRJNA576995_P_NODE_33485_length_258_cov_1.367568_g32893_i0 PRJNA576995 33485 258 1.367568 3.52832544 Panthera pardus 9691 Chordata Chordata 42.7 0.0344   NR XP_053761308.1 9691 g32893 i0 35.1 0.895348837209302 77 49 89.5 1 6 236 25 100 XP_053761308.1 uncharacterized protein LOC109271509, partial [Panthera pardus] diamond 231 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Panthera Panthera pardus
28058654 28058654 PRJNA576995_P_NODE_36685_length_249_cov_0.875000_g36093_i0 PRJNA576995 36685 249 0.875 2.17875 Turdus rufiventris 311356 Chordata Chordata 81.3 3.71e-16   NR KAF4804543.1 311356 g36093 i0 51.9 1.93975903614458 79 37 95.2 1 12 248 73 150 KAF4804543.1 Signal peptidase complex catalytic subunit SEC11A [Turdus rufiventris] diamond 483 81.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Turdidae Turdus Turdus rufiventris
28058657 28058657 PRJNA576995_P_NODE_39365_length_246_cov_0.890173_g38773_i0 PRJNA576995 39365 246 0.890173 2.18982558 Engystomops pustulosus 76066 Chordata Chordata 84.3 9.13e-17   NR KAG8571490.1 76066 g38773 i0 58.4 10.2439024390244 77 32 93.9 0 246 16 1030 1106 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 2520 84.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
28103662 28103662 PRJNA576995_P_NODE_43045_length_241_cov_0.916667_g42453_i0 PRJNA576995 43045 241 0.916667 2.20916747 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 71.2 2.06e-13   NR KAK4808157.1 33587 g42453 i0 52.1 8.21576763485477 73 31 88.4 2 226 14 22 92 KAK4808157.1 hypothetical protein QYF61_001189 [Mycteria americana] diamond 1980 71.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
29209080 29209080 PRJNA576995_P_NODE_26429_length_297_cov_1.370536_g25837_i0 PRJNA576995 26429 297 1.370536 4.07049192 root 1 Root_unresolved Root_unresolved 165 1.5999999999999998e-49   NR XP_039252005.1 7725 g25837 i0 78.7 235.050505050505 94 20 94.9 0 14 295 1 94 XP_039252005.1 ras-related protein Rac1 [Styela clava] diamond 69810 166 0.993975903614458 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
29384947 29384947 PRJNA576995_P_NODE_41349_length_244_cov_0.789474_g40757_i0 PRJNA576995 41349 244 0.789474 1.92631656 Ranitomeya imitator 111125 Chordata Chordata 47.4 9.03e-4   NR CAJ0941415.1 111125 g40757 i0 49.3 3.2827868852459 67 34 82.4 0 241 41 602 668 CAJ0941415.1 unnamed protein product [Ranitomeya imitator] diamond 801 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
29700180 29700180 PRJNA576995_P_NODE_30850_length_273_cov_2.685000_g30258_i0 PRJNA576995 30850 273 2.685 7.33005 Clavelina lepadiformis 159417 Chordata Chordata 86.3 2.63e-17   NR CAK8689709.1 159417 g30258 i0 76.5 2.21978021978022 68 16 74.7 0 271 68 669 736 CAK8689709.1 unnamed protein product [Clavelina lepadiformis] diamond 606 86.3 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
29903666 29903666 PRJNA576995_P_NODE_33791_length_256_cov_1.300546_g33199_i0 PRJNA576995 33791 256 1.300546 3.32939776 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 50.1 1.14e-4   NR KAK9405914.1 8729 g33199 i0 37.2 5.8125 86 44 89.1 2 1 228 329 414 KAK9405914.1 butyrophilin subfamily 2 member A2-like [Crotalus adamanteus] diamond 1488 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
30364370 30364370 PRJNA576995_P_NODE_28332_length_287_cov_1.121495_g27740_i0 PRJNA576995 28332 287 1.121495 3.21869065 Gopherus evgoodei 1825980 Chordata Chordata 45.8 0.0053   NR XP_030400380.1 1825980 g27740 i0 55.3 0.397212543554007 38 16 38.7 1 111 1 369 406 XP_030400380.1 zinc finger protein 628 isoform X1 [Gopherus evgoodei] diamond 114 45.8 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Testudinidae Gopherus Gopherus evgoodei
31216629 31216629 PRJNA576995_P_NODE_39435_length_246_cov_0.890173_g38843_i0 PRJNA576995 39435 246 0.890173 2.18982558 Styela clava 7725 Chordata Chordata 60.8 1.32e-8   NR XP_039254344.1 7725 g38843 i0 42.9 3.76829268292683 77 43 93.9 1 232 2 125 200 XP_039254344.1 uncharacterized protein LOC120331335 [Styela clava] diamond 927 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
31691454 31691454 PRJNA576995_P_NODE_41997_length_243_cov_0.900000_g41405_i0 PRJNA576995 41997 243 0.9 2.187 Pleurodeles waltl 8319 Chordata Chordata 41.2 0.042   NR KAJ1165027.1 8319 g41405 i0 38.3 0.580246913580247 47 27 55.6 1 139 5 9 55 KAJ1165027.1 hypothetical protein NDU88_005457 [Pleurodeles waltl] diamond 141 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
32243185 32243185 PRJNA576995_P_NODE_35358_length_251_cov_0.865169_g34766_i0 PRJNA576995 35358 251 0.865169 2.17157419 Metazoa 33208 Chordata Chordata 78.2 1.37e-14   NR XP_038675545.1 7830 g34766 i0 50.6 5.65338645418327 77 37 92 1 18 248 730 805 XP_038675545.1 uncharacterized protein LOC119978187 [Scyliorhinus canicula] diamond 1419 78.2 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
32338036 32338036 PRJNA576995_P_NODE_34319_length_253_cov_0.855556_g33727_i0 PRJNA576995 34319 253 0.855556 2.16455668 root 1 Root_unresolved Root_unresolved 43.5 0.0231   NR KAF2981279.1 2498840 g33727 i0 32.8 2.01581027667984 67 42 77.1 2 29 223 18 83 KAF2981279.1 hypothetical protein EK904_004086 [Melospiza melodia maxima] diamond 510 43.9 0.990888382687927 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Passerellidae Melospiza Melospiza melodia
32496145 32496145 PRJNA576995_P_NODE_24439_length_309_cov_1.139831_g23847_i0 PRJNA576995 24439 309 1.139831 3.52207779 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 49.7 2.82e-4   NR NP_001071879.1 7719 g23847 i0 44.4 2.09708737864078 45 25 43.7 0 175 309 115 159 NP_001071879.1 zinc finger protein [Ciona intestinalis] diamond 648 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
32671647 32671647 PRJNA576995_P_NODE_22880_length_318_cov_1.257143_g22288_i0 PRJNA576995 22880 318 1.257143 3.99771474 Ochotona curzoniae 130825 Chordata Chordata 97.8 5.3e-23   NR XP_040846250.1 130825 g22288 i0 49.5 5.68867924528302 101 48 95.3 1 16 318 3 100 XP_040846250.1 receptor expression-enhancing protein 6 [Ochotona curzoniae] diamond 1809 97.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Ochotonidae Ochotona Ochotona curzoniae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;