RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA576995" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA576995 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30472390 30472390 PRJNA576995_P_NODE_39653_length_246_cov_0.890173_g39061_i0 PRJNA576995 39653 246 0.890173 2.18982558 Eucoccidiorida 75739 SAR_Eukaryotes SAR_Eukaryotes 64.3 7.39e-11   NR OEH75044.1 88456 g39061 i0 60.3 4.30487804878049 63 23 74.4 1 245 63 70 132 OEH75044.1 40s ribosomal protein [Cyclospora cayetanensis] diamond 1059 64.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
31438333 31438333 PRJNA576995_P_NODE_30036_length_278_cov_1.126829_g29444_i0 PRJNA576995 30036 278 1.126829 3.13258462 Plasmodium falciparum Dd2 57267 SAR_Eukaryotes SAR_Eukaryotes 108 5.8e-27   NR KOB85687.1 57267 g29444 i0 51.6 5.89208633093525 91 44 98.2 0 5 277 50 140 KOB85687.1 hypothetical protein PFDG_01164 [Plasmodium falciparum Dd2] diamond 1638 108 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
32811181 32811181 PRJNA576995_P_NODE_40020_length_245_cov_0.895349_g39428_i0 PRJNA576995 40020 245 0.895349 2.19360505 Eimeria 5800 SAR_Eukaryotes SAR_Eukaryotes 53.1 8.39e-6   NR XP_013249611.1 5801 g39428 i0 35.8 2.46122448979592 67 43 82 0 214 14 1462 1528 XP_013249611.1 DNA polymerase, related [Eimeria acervulina] diamond 603 53.5 0.992523364485981 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;