RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA575566" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA575566 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28311351 28311351 PRJNA575566_P_NODE_15446_length_268_cov_1.545894_g15249_i0 PRJNA575566 15446 268 1.545894 4.14299592 Mesocestoides corti 53468 Platyhelminthes Platyhelminthes 77.8 1e-14   NR VDD81745.1 53468 g15249 i0 50.6 0.92910447761194 83 26 92.9 1 17 265 112 179 VDD81745.1 unnamed protein product, partial [Mesocestoides corti] diamond 249 77.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Mesocestoididae Mesocestoides Mesocestoides corti
29240522 29240522 PRJNA575566_P_NODE_9549_length_338_cov_1.386282_g9352_i0 PRJNA575566 9549 338 1.386282 4.68563316 Schistosomatidae 31245 Platyhelminthes Platyhelminthes 168 2.63e-49   NR CAX78280.1 6182 g9352 i0 75 15.887573964497 112 28 99.4 0 336 1 5 116 CAX78280.1 putative ribosomal protein L5 [Schistosoma japonicum] diamond 5370 169 0.994082840236686 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
32514320 32514320 PRJNA575566_P_NODE_24099_length_209_cov_0.864865_g23902_i0 PRJNA575566 24099 209 0.864865 1.80756785 Calicophoron daubneyi 300641 Platyhelminthes Platyhelminthes 82.8 1.86e-16   NR CAL5132287.1 300641 g23902 i0 54.3 3.01435406698565 70 31 99 1 2 208 1509 1578 CAL5132287.1 unnamed protein product [Calicophoron daubneyi] diamond 630 82.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Paramphistomidae Calicophoron Calicophoron daubneyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;