RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA575566" and tax_phylum = "Planctomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA575566 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28609016 28609016 PRJNA575566_P_NODE_7887_length_374_cov_1.191693_g7690_i0 PRJNA575566 7887 374 1.191693 4.45693182 Bacteria 2 Bacteria Bacteria 105 1.69e-23   NR MEI8213485.1 2026780 g7690 i0 49.6 2.00534759358289 121 57 96.3 2 374 15 132 249 MEI8213485.1 peroxidase family protein [Planctomycetota bacterium] diamond 750 106 0.990566037735849 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29745415 29745415 PRJNA575566_P_NODE_28430_length_203_cov_0.901408_g28233_i0 PRJNA575566 28430 203 0.901408 1.82985824 Bacteria 2 Bacteria Bacteria 43.5 0.0121   NR WP_096894051.1 1284222 g28233 i0 52.8 6.65024630541872 36 17 53.2 0 96 203 1356 1391 WP_096894051.1 tetratricopeptide repeat protein [Candidatus Scalindua japonica] diamond 1350 43.9 0.990888382687927 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Scalinduaceae Candidatus Scalindua Candidatus Scalindua japonica
30174255 30174255 PRJNA575566_P_NODE_1892_length_746_cov_2.769343_g1713_i0 PRJNA575566 1892 746 2.769343 20.65929878 Paludisphaera sp. 2017432 Bacteria Bacteria 53.5 1.95e-4   NR WP_337176277.1 2017432 g1713 i0 29.9 1.60053619302949 197 117 74 9 684 133 26 214 WP_337176277.1 hypothetical protein [Paludisphaera sp.] diamond 1194 53.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Paludisphaera Paludisphaera sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;