RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA575566" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA575566 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29082706 29082706 PRJNA575566_P_NODE_23748_length_211_cov_1.280000_g23551_i0 PRJNA575566 23748 211 1.28 2.7008 Rhabditida 6236 Nematoda Nematoda 47 7.79e-4   NR TKR77106.1 34508 g23551 i0 39.7 4.29383886255924 58 26 73.9 4 33 188 537 591 TKR77106.1 hypothetical protein L596_018138 [Steinernema carpocapsae] diamond 906 47 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
31388849 31388849 PRJNA575566_P_NODE_20736_length_230_cov_1.136095_g20539_i0 PRJNA575566 20736 230 1.136095 2.6130185 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 108 4.2e-27   NR CAJ0565604.1 96644 g20539 i0 70.1 9.97826086956522 77 22 99.1 1 230 3 108 184 CAJ0565604.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 2295 109 0.990825688073395 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
31976045 31976045 PRJNA575566_P_NODE_23678_length_211_cov_1.706667_g23481_i0 PRJNA575566 23678 211 1.706667 3.60106737 Anisakis simplex 6269 Nematoda Nematoda 99.4 8.74e-25   NR VDK65610.1 6269 g23481 i0 60.6 3.72511848341232 66 26 93.8 0 200 3 10 75 VDK65610.1 unnamed protein product [Anisakis simplex] diamond 786 99.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
31989621 31989621 PRJNA575566_P_NODE_12318_length_299_cov_1.075630_g12121_i0 PRJNA575566 12318 299 1.07563 3.2161337 Opisthokonta 33154 Nematoda Nematoda 47.8 0.00119   NR CAJ0579174.1 96644 g12121 i0 58.3 1.11371237458194 36 15 36.1 0 163 270 145 180 CAJ0579174.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 333 47.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;