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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA575566" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA575566 · 11 ✖

analysis 1

  • diamond · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15164895 15164895 PRJNA575566_P_NODE_2772_length_621_cov_2.180357_g2582_i0 PRJNA575566 2772 621 2.180357 13.54001697 Metazoa 33208 Chordata Chordata 335 1.1199999999999997e-104   NR KAI8494249.1 7741 g2582 i0 79.3 16.280193236715 198 41 95.7 0 619 26 865 1062 KAI8494249.1 Elongation factor 1-alpha 1 [Branchiostoma belcheri] diamond 10110 335 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
26934891 26934891 PRJNA575566_P_NODE_11242_length_312_cov_1.780876_g11045_i0 PRJNA575566 11242 312 1.780876 5.55633312 Chordata 7711 Chordata Chordata 46.2 0.0053   NR XP_053575473.1 8345 g11045 i0 69 0.932692307692308 29 9 27.9 0 207 293 1255 1283 XP_053575473.1 LOW QUALITY PROTEIN: hydrocephalus-inducing protein homolog [Bombina bombina] diamond 291 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
27441070 27441070 PRJNA575566_P_NODE_3443_length_560_cov_1.158317_g3247_i0 PRJNA575566 3443 560 1.158317 6.4865752 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 51.2 9.2e-4   NR XP_039766690.1 9258 g3247 i0 47.6 1.06607142857143 42 22 22.5 0 3 128 1725 1766 XP_039766690.1 LOW QUALITY PROTEIN: proprotein convertase subtilisin/kexin type 5 [Ornithorhynchus anatinus] diamond 597 51.6 0.992248062015504 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus
28387914 28387914 PRJNA575566_P_NODE_27086_length_205_cov_0.888889_g26889_i0 PRJNA575566 27086 205 0.888889 1.82222245 Opisthokonta 33154 Chordata Chordata 115 1.06e-28   NR XP_043933806.1 7888 g26889 i0 80.9 116.429268292683 68 13 99.5 0 204 1 24 91 XP_043933806.1 60S ribosomal protein L4 [Protopterus annectens] diamond 23868 116 0.991379310344828 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
28406032 28406032 PRJNA575566_P_NODE_29086_length_202_cov_0.907801_g28889_i0 PRJNA575566 29086 202 0.907801 1.83375802 Serinus canaria 9135 Chordata Chordata 42 0.0359   NR XP_050826426.1 9135 g28889 i0 57.1 1.33663366336634 35 15 52 0 38 142 59 93 XP_050826426.1 R-spondin-2 isoform X2 [Serinus canaria] diamond 270 42.4 0.990566037735849 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Serinus Serinus canaria
30395920 30395920 PRJNA575566_P_NODE_24393_length_209_cov_0.864865_g24196_i0 PRJNA575566 24393 209 0.864865 1.80756785 Eleutherodactylus coqui 57060 Chordata Chordata 52.8 6.83e-6   NR XP_066463888.1 57060 g24196 i0 50 0.660287081339713 46 21 66 1 1 138 46 89 XP_066463888.1 leukocyte receptor cluster member 9 [Eleutherodactylus coqui] diamond 138 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Eleutherodactylidae Eleutherodactylus Eleutherodactylus coqui
30584886 30584886 PRJNA575566_P_NODE_27173_length_205_cov_0.888889_g26976_i0 PRJNA575566 27173 205 0.888889 1.82222245 Staurois parvus 386267 Chordata Chordata 83.6 5.77e-19   NR CAI9618505.1 386267 g26976 i0 68.1 1.00975609756098 69 20 99.5 2 2 205 25 92 CAI9618505.1 unnamed protein product, partial [Staurois parvus] diamond 207 83.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
30932666 30932666 PRJNA575566_P_NODE_22434_length_219_cov_1.613924_g22237_i0 PRJNA575566 22434 219 1.613924 3.53449356 Aquarana catesbeiana 8400 Chordata Chordata 77.8 1.74e-16   NR ACO51987.1 8400 g22237 i0 56.3 9.78082191780822 64 28 87.7 0 22 213 1 64 ACO51987.1 60S acidic ribosomal protein P2 [Aquarana catesbeiana] diamond 2142 78.2 0.994884910485933 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Aquarana Aquarana catesbeiana
31817858 31817858 PRJNA575566_P_NODE_8557_length_358_cov_2.094276_g8360_i0 PRJNA575566 8557 358 2.094276 7.49750808 Phascolarctos cinereus 38626 Chordata Chordata 117 5.28e-29   NR XP_020844228.1 38626 g8360 i0 50 1.95251396648045 118 47 92.2 2 332 3 13 126 XP_020844228.1 ADP/ATP translocase 4 [Phascolarctos cinereus] diamond 699 117 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phascolarctidae Phascolarctos Phascolarctos cinereus
32545883 32545883 PRJNA575566_P_NODE_24559_length_209_cov_0.864865_g24362_i0 PRJNA575566 24559 209 0.864865 1.80756785 Varanus komodoensis 61221 Chordata Chordata 55.5 7.69e-7   NR KAF7250664.1 61221 g24362 i0 38.6 3.17224880382775 57 32 77.5 1 46 207 92 148 KAF7250664.1 Proprotein convertase subtilisin/kexin type 5, partial [Varanus komodoensis] diamond 663 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
32608751 32608751 PRJNA575566_P_NODE_27980_length_204_cov_0.895105_g27783_i0 PRJNA575566 27980 204 0.895105 1.8260142 Pseudonaja textilis 8673 Chordata Chordata 60.1 1.21e-8   NR XP_026573509.1 8673 g27783 i0 52.8 2.04411764705882 72 23 98.5 3 202 2 42 107 XP_026573509.1 cathepsin F [Pseudonaja textilis] diamond 417 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Pseudonaja Pseudonaja textilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;