RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA575566" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA575566 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9488398 9488398 PRJNA575566_P_NODE_20748_length_230_cov_1.136095_g20551_i0 PRJNA575566 20748 230 1.136095 2.6130185 Bdellovibrio sp. HCB2-146 3394362 Bacteria Bacteria 150 3.6e-45   NR WP_413939772.1 3394362 g20551 i0 100 0.991304347826087 76 0 99.1 0 229 2 5 80 WP_413939772.1 RNA recognition motif domain-containing protein [Bdellovibrio sp. HCB2-146] diamond 228 150 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB2-146
12039213 12039213 PRJNA575566_P_NODE_25970_length_207_cov_0.876712_g25773_i0 PRJNA575566 25970 207 0.876712 1.81479384 Bdellovibrio sp. HCB2-146 3394362 Bacteria Bacteria 131 4.85e-34   NR WP_413938877.1 3394362 g25773 i0 100 0.985507246376812 68 0 98.6 0 206 3 3 70 WP_413938877.1 microtubule-binding protein [Bdellovibrio sp. HCB2-146] diamond 204 131 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB2-146
20263235 20263235 PRJNA575566_P_NODE_24696_length_208_cov_1.292517_g24499_i0 PRJNA575566 24696 208 1.292517 2.68843536 Bdellovibrio sp. HCB2-146 3394362 Bacteria Bacteria 124 1.22e-33   NR WP_413941498.1 3394362 g24499 i0 95.5 0.951923076923077 66 3 95.2 0 198 1 1 66 WP_413941498.1 MotA/TolQ/ExbB proton channel family protein [Bdellovibrio sp. HCB2-146] diamond 198 124 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB2-146
26889934 26889934 PRJNA575566_P_NODE_24281_length_209_cov_0.864865_g24084_i0 PRJNA575566 24281 209 0.864865 1.80756785 Bdellovibrio sp. HCB2-146 3394362 Bacteria Bacteria 118 3.32e-29   NR WP_413939334.1 3394362 g24084 i0 95.7 0.990430622009569 69 3 99 0 207 1 432 500 WP_413939334.1 methyl-accepting chemotaxis protein [Bdellovibrio sp. HCB2-146] diamond 207 118 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB2-146
27205712 27205712 PRJNA575566_P_NODE_27762_length_204_cov_0.895105_g27565_i0 PRJNA575566 27762 204 0.895105 1.8260142 Bdellovibrio sp. HCB2-146 3394362 Bacteria Bacteria 127 1.2e-34   NR WP_413941452.1 3394362 g27565 i0 85.1 0.985294117647059 67 10 98.5 0 2 202 33 99 WP_413941452.1 3D domain-containing protein [Bdellovibrio sp. HCB2-146] diamond 201 127 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB2-146
28279477 28279477 PRJNA575566_P_NODE_28386_length_203_cov_0.901408_g28189_i0 PRJNA575566 28386 203 0.901408 1.82985824 Bdellovibrio sp. HCB2-146 3394362 Bacteria Bacteria 131 3.76e-34   NR WP_413939910.1 3394362 g28189 i0 98.4 0.916256157635468 62 1 91.6 0 201 16 464 525 WP_413939910.1 hypothetical protein [Bdellovibrio sp. HCB2-146] diamond 186 131 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB2-146
29164021 29164021 PRJNA575566_P_NODE_27949_length_204_cov_0.895105_g27752_i0 PRJNA575566 27949 204 0.895105 1.8260142 Bdellovibrio sp. HCB2-146 3394362 Bacteria Bacteria 132 3.59e-35   NR WP_413939332.1 3394362 g27752 i0 100 0.985294117647059 67 0 98.5 0 202 2 305 371 WP_413939332.1 cell division protein FtsA [Bdellovibrio sp. HCB2-146] diamond 201 132 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB2-146
32387454 32387454 PRJNA575566_P_NODE_25959_length_207_cov_0.876712_g25762_i0 PRJNA575566 25959 207 0.876712 1.81479384 Bdellovibrio sp. HCB2-146 3394362 Bacteria Bacteria 129 1.14e-33   NR WP_413941783.1 3394362 g25762 i0 87 1 69 9 100 0 207 1 249 317 WP_413941783.1 NAD(P)/FAD-dependent oxidoreductase [Bdellovibrio sp. HCB2-146] diamond 207 129 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB2-146
32482529 32482529 PRJNA575566_P_NODE_29159_length_202_cov_0.907801_g28962_i0 PRJNA575566 29159 202 0.907801 1.83375802 Bdellovibrio sp. HCB2-146 3394362 Bacteria Bacteria 141 3.29e-39   NR WP_413940981.1 3394362 g28962 i0 100 0.98019801980198 66 0 98 0 200 3 67 132 WP_413940981.1 tryptophan--tRNA ligase [Bdellovibrio sp. HCB2-146] diamond 198 141 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB2-146

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;